rename tokenizers -> tokenisers to avoid conflicts

Signed-off-by: Zhiyuan Chen <[email protected]>
DLS5-Omics · Apr 23, 2024 · f2bb65e · f2bb65e
1 parent 262e5c5
commit f2bb65e
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Showing 20 changed files with 16 additions and 16 deletions.
diff --git a/multimolecule/__init__.py b/multimolecule/__init__.py
@@ -1,4 +1,4 @@
-from . import models, tokenizers
+from . import models, tokenisers
 from .models import (
     RnaBertConfig,
     RnaBertForCrisprOffTarget,
@@ -43,11 +43,11 @@
     UtrLmForTokenClassification,
     UtrLmModel,
 )
-from .tokenizers import RnaTokenizer
+from .tokenisers import RnaTokenizer
 
 __all__ = [
     "models",
-    "tokenizers",
+    "tokenisers",
     "RnaTokenizer",
     "RnaBertConfig",
     "RnaBertModel",

diff --git a/multimolecule/models/__init__.py b/multimolecule/models/__init__.py
@@ -1,4 +1,4 @@
-from ..tokenizers.rna import RnaTokenizer
+from ..tokenisers.rna import RnaTokenizer
 from .rnabert import (
     RnaBertConfig,
     RnaBertForCrisprOffTarget,

diff --git a/multimolecule/models/rnabert/__init__.py b/multimolecule/models/rnabert/__init__.py
@@ -8,7 +8,7 @@
     AutoTokenizer,
 )
 
-from multimolecule.tokenizers.rna import RnaTokenizer
+from multimolecule.tokenisers.rna import RnaTokenizer
 
 from .configuration_rnabert import RnaBertConfig
 from .modeling_rnabert import (

diff --git a/multimolecule/models/rnabert/convert_checkpoint.py b/multimolecule/models/rnabert/convert_checkpoint.py
@@ -6,7 +6,7 @@
 
 from multimolecule.models.rnabert import RnaBertConfig as Config
 from multimolecule.models.rnabert import RnaBertForPretraining as Model
-from multimolecule.tokenizers.rna.utils import (
+from multimolecule.tokenisers.rna.utils import (
     convert_word_embeddings,
     get_special_tokens_map,
     get_tokenizer_config,

diff --git a/multimolecule/models/rnafm/__init__.py b/multimolecule/models/rnafm/__init__.py
@@ -8,7 +8,7 @@
     AutoTokenizer,
 )
 
-from multimolecule.tokenizers.rna import RnaTokenizer
+from multimolecule.tokenisers.rna import RnaTokenizer
 
 from .configuration_rnafm import RnaFmConfig
 from .modeling_rnafm import (

diff --git a/multimolecule/models/rnafm/convert_checkpoint.py b/multimolecule/models/rnafm/convert_checkpoint.py
@@ -6,7 +6,7 @@
 
 from multimolecule.models import RnaFmConfig as Config
 from multimolecule.models import RnaFmForPretraining as Model
-from multimolecule.tokenizers.rna.utils import (
+from multimolecule.tokenisers.rna.utils import (
     convert_word_embeddings,
     get_special_tokens_map,
     get_tokenizer_config,

diff --git a/multimolecule/models/rnamsm/__init__.py b/multimolecule/models/rnamsm/__init__.py
@@ -8,7 +8,7 @@
     AutoTokenizer,
 )
 
-from multimolecule.tokenizers.rna import RnaTokenizer
+from multimolecule.tokenisers.rna import RnaTokenizer
 
 from .configuration_rnamsm import RnaMsmConfig
 from .modeling_rnamsm import (

diff --git a/multimolecule/models/rnamsm/convert_checkpoint.py b/multimolecule/models/rnamsm/convert_checkpoint.py
@@ -6,7 +6,7 @@
 
 from multimolecule.models import RnaMsmConfig as Config
 from multimolecule.models import RnaMsmForPretraining as Model
-from multimolecule.tokenizers.rna.utils import (
+from multimolecule.tokenisers.rna.utils import (
     convert_word_embeddings,
     get_special_tokens_map,
     get_tokenizer_config,

diff --git a/multimolecule/models/splicebert/__init__.py b/multimolecule/models/splicebert/__init__.py
@@ -8,7 +8,7 @@
     AutoTokenizer,
 )
 
-from multimolecule.tokenizers.rna import RnaTokenizer
+from multimolecule.tokenisers.rna import RnaTokenizer
 
 from .configuration_splicebert import SpliceBertConfig
 from .modeling_splicebert import (

diff --git a/multimolecule/models/splicebert/convert_checkpoint.py b/multimolecule/models/splicebert/convert_checkpoint.py
@@ -6,7 +6,7 @@
 
 from multimolecule.models import SpliceBertConfig as Config
 from multimolecule.models import SpliceBertForPretraining as Model
-from multimolecule.tokenizers.rna.utils import (
+from multimolecule.tokenisers.rna.utils import (
     convert_word_embeddings,
     get_special_tokens_map,
     get_tokenizer_config,

diff --git a/multimolecule/models/utrbert/__init__.py b/multimolecule/models/utrbert/__init__.py
@@ -9,7 +9,7 @@
     AutoTokenizer,
 )
 
-from multimolecule.tokenizers.rna import RnaTokenizer
+from multimolecule.tokenisers.rna import RnaTokenizer
 
 from .configuration_utrbert import UtrBertConfig
 from .modeling_utrbert import (

diff --git a/multimolecule/models/utrbert/convert_checkpoint.py b/multimolecule/models/utrbert/convert_checkpoint.py
@@ -6,7 +6,7 @@
 
 from multimolecule.models import UtrBertConfig as Config
 from multimolecule.models import UtrBertForPretraining as Model
-from multimolecule.tokenizers.rna.utils import (
+from multimolecule.tokenisers.rna.utils import (
     convert_word_embeddings,
     get_special_tokens_map,
     get_tokenizer_config,

diff --git a/multimolecule/models/utrlm/__init__.py b/multimolecule/models/utrlm/__init__.py
@@ -8,7 +8,7 @@
     AutoTokenizer,
 )
 
-from multimolecule.tokenizers.rna import RnaTokenizer
+from multimolecule.tokenisers.rna import RnaTokenizer
 
 from .configuration_utrlm import UtrLmConfig
 from .modeling_utrlm import (

diff --git a/multimolecule/models/utrlm/convert_checkpoint.py b/multimolecule/models/utrlm/convert_checkpoint.py
@@ -6,7 +6,7 @@
 
 from multimolecule.models import UtrLmConfig as Config
 from multimolecule.models import UtrLmForPretraining as Model
-from multimolecule.tokenizers.rna.utils import (
+from multimolecule.tokenisers.rna.utils import (
     convert_word_embeddings,
     get_special_tokens_map,
     get_tokenizer_config,

diff --git a/multimolecule/tokenizers/__init__.py → multimolecule/tokenisers/__init__.py b/multimolecule/tokenizers/__init__.py → multimolecule/tokenisers/__init__.py
diff --git a/multimolecule/tokenizers/rna/__init__.py → multimolecule/tokenisers/rna/__init__.py b/multimolecule/tokenizers/rna/__init__.py → multimolecule/tokenisers/rna/__init__.py
diff --git a/...lecule/tokenizers/rna/tokenization_rna.py → ...lecule/tokenisers/rna/tokenization_rna.py b/...lecule/tokenizers/rna/tokenization_rna.py → ...lecule/tokenisers/rna/tokenization_rna.py
diff --git a/multimolecule/tokenizers/rna/utils.py → multimolecule/tokenisers/rna/utils.py b/multimolecule/tokenizers/rna/utils.py → multimolecule/tokenisers/rna/utils.py
diff --git a/multimolecule/tokenizers/rna/vocab.txt → multimolecule/tokenisers/rna/vocab.txt b/multimolecule/tokenizers/rna/vocab.txt → multimolecule/tokenisers/rna/vocab.txt
diff --git a/multimolecule/tokenizers/utils.py → multimolecule/tokenisers/utils.py b/multimolecule/tokenizers/utils.py → multimolecule/tokenisers/utils.py