Code

New loaders#47

Code

Merged

johentsch merged 216 commits intoDCMLab:developmentDCMLab/dimcat:developmentfrom johentsch:loaderjohentsch/dimcat:loaderCopy head branch name to clipboardNov 7, 2023

+12,974-22,003

Commits

Commits on Jun 23, 2023

• privatizes many methods of PipelineStep and allows .process_resource(<path>); replaces ms3.resolve_dir() with utils.resolve_path();

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  c847282

• pulls apart FeatureStep(PipelineStep), which all PipelineSteps currently implemented derive from;

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  06f5443

• renames PipelineStep._dispatch() => _make_new_resource()

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  84e8ad9

Commits on Jun 25, 2023

• early version of the MuseScoreLoader

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  f0a7b37

Commits on Jun 26, 2023

• makes loaders a package; separates ScoreLoader from Loader; adds skeleton for Music21Loader

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• first naive version performing a raw music21 parse (events shadow structure table; datatypes not cleaned; values such as time signatures not propagated; many redundant columns by using parse_m21_ob…

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  johentsch

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  babfc22

• advances Music21Loader to parse a single resource

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• enables Music21Loader to recursively scan directory; computation of IDs currently a fallback to (folder, fname); switched order of __init__ arguments, making package_name mandatory, but not source …

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  c1a850f

• adds basepath argument to Dataset.__init__()

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• adds default_output_dir = "~/dimcat_data" to settings.ini

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  28da592

Commits on Jun 27, 2023

• enables ScoreLoader.process(Dataset)

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• moves PathFactory to loaders.utils

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• moves class variables and paths property up

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  4e7c845

• pulls up Loader._process_dataset() harmonizing it for all loaders through the user of Loader.iter_package_descriptors()

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  d695194

• implements PackageLoader (closes DCMLab#40)

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  54b911f

• updates contributors' guide

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  c0c69f9

• corrects dependency syntax

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  e45decb

• renames default_output_dir => default_basepath and makes tests pass

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Commits on Jul 2, 2023

• drop empty columns when creating dataframe from m21

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• cleans up outputs and replaces print() with logger.info()

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• renames subdirs to return_tuples

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• log message

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  9f65bcf

• renames FeatureStep => FeatureProcessingStep and adds some docs

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  ad39517

• better explanation of the FeatureProcessingStep.is_transformation property

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  567bc8a

• makes Pipeline a subclass of PipelineStp (not FeatureProcessingStep)

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  a8683c6

• adds Loader test case to test_base.py; + a few cosmetics

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  33dfed5

• makes utils.resolve_path() typesafe

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  763a303

• improves PackageLoader by not requiring a package_name and discovering only JSON files ending on "package.json" (which requires preventing loaders.utils.make_extension_regex() from adding initial d…

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  committed
  f21d12d

• implements Dataset.from_loader() (closes DCMLab#42 🎉)

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  1d9300a

• implements Loader.create_dataset() (closes DCMLab#41)

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  33908c6

• adds DimcatPackage.get_piece_index()

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  e4d22aa

• adds DimcatPackage.get_boolean_resource_table() and tests that its index is equal to .get_piece_index()

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  a67fe1e

• makes DimcatResource a subclass of the new Resource base class

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  8089c75

• adds a new Resource superclass and pulls basepath attribute up to the Data base class (all data objects come with a basepath now)

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Commits on Jul 3, 2023

• introduces new setting "default_resource_name"

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  ff163ee

• cleans up and facilitates DimcatResource.__init__() and adapts Data objects to account for Data's default basepath field (handling of the __init__argument moved to dimcat.utils._set_new_basepath)

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• Merge branch 'development' into loader

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  e05da81

Commits on Jul 4, 2023

• Merge branch 'development' into loader

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  f437c24

• moves DimcatResource.Schema.init_object() up to Resource.Schema

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• adds base test case for Resource

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  0cd83d8

• moves DimcatPackage unittests to test_package.py

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  6b84707

• moves get_score_paths() to conftest

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  0edfb57

• generalizes get_score_paths(), specifies get_m21_score_paths()

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• updates TestBaseResource to run on multiple, mixed score paths

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• adds DimcatPackage.from_resources() and .from_filepaths(), and allows for seperate handling of Resource vs. DimcatResources (the former represents just a filepath, the latter is a dataframe and exp…

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  johentsch

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• introduces global constant TEST_N_SCORES to allow for speeding up tests during development

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• renames DimcatPackage.make_new_resource() to .add_new_dimcat_resource(). This is because of the distinction against Resource, the near shadowing of the new staticmethod ._make_new_resource(), and t…

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  johentsch

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  90ffbcd

• renames Loader.add_piece_facet() => .add_piece_facet_dataframe() to avoid confusion with future Facet(DimcatResource) objects

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  9dd3b03

Commits on Jul 5, 2023

• factors out dataset.base.PackageSchema in order to introduce the distinction Schema - PickleSchema; adds DimcatPackage.from_directory() and .make_descriptor()

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  johentsch

  committed
  615fbd7

• pulls up Data.to_dict(pickle=False) and Data.pickle_schema and Data.get_basepath (including default basepath); quite some refactoring in dimcat.data.resources.base, especially pulling up to Resourc…

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  johentsch

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  1a505bf

• more robust handling of descriptor_filepath

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  5720cba

• adds property ID to Resource objects and allows for storing a corpus_name

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  99896c4

• updates resolve_dir(), stripping terminal separators so that the basename can be safely used

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  047ae68

• enables specifying resource_names and corpus_names (factories) when creating a DimcatPackage to control the resource IDs

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  4752f97

• tidies up Resource API removing unmanageable side-effects. DimcatResource yet to follow.

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  404ce24

Commits on Jul 6, 2023

• tidies up DimcatResource API according to the previous clean-up of Resource

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  bde5bc0

• removes now superfluous methods _set_descriptor_path and _set_file_path

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  ffa5ee2

Commits on Jul 7, 2023

• Resource.from_descriptor() now deserializes as the correct subclass if the descriptor contains "dtype"; more consistent warning about incoherent basepath vs. filepath vs. descriptor_filepath

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  3694a85

• precicises all internal imports

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  c2b6f85

• creates Package superclass (WIP)

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  bec25d4

• factors out catalog and package into their own Python packages

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  fa07c07

• overall uniform packaging structure with subpackages of data and steps named in singular

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  06b8bcf

Commits on Jul 8, 2023

• adds dedicated PathResource; harmonizes ResourceStatus and how Resource and DimcatResource deal with it as well as their properties. Also introduces two new settings, package_descriptor_endings and…

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• docs on ResourceStatus

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  a0b1670

Commits on Jul 10, 2023

• first step towards Packages correctly handling resources including path and status management and copying

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  18491b7

Commits on Jul 18, 2023

• updates project requirements

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  545e94e

• replaces manual.rst with a subfolder containing the Jupytext notebook data.md

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  16dc2eb

• commenting out modin[ray] for now

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  5eb74d0

• moves the Minimal Working Example 'mwe' from the top level into docs, leaving only the JupyText notebook

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  a3fb373

• updates unittest_metacorpus commit

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  47b22a8

• overall uniform packaging structure with subpackages of data and steps named in singular

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  dc8dfb0

• DimcatPackage to store resources in ZIP archive by default

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  47ce991

• enables 'from dimcat import Pipeline'

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  97ff9cb

• loaders underway to being adapted

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  4e5cf09

• manual/data work-in-progress

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  1e0a71a

Commits on Jul 19, 2023

• adds Python package for slicer

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  af01cee

• towards fixing the loader tests

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  55ae3c8

• fixes for test_base.py

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  943035f

• makes all tests in test_package.py pass

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  22836bd

• exludes RECONCILE modes from test_package.py to prevent copying the resource added in "test_adding_resource()" into the unittest_metarepo

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  88dba35

• prevents PathPackage from storing its descriptor after adding a resource

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  ae555ff

• adapts Catalog to use Package (instead of DimcatPackage exclusively)

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  0a1c984

• progress on the loaders

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  d59bcfd

• Merge branch 'loader' into slicer

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  f592bcf

• minor bug fixes

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  28f515a

• behaviour closer to how it should be makes more tests fail

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  2637925

Commits on Jul 22, 2023

• Dependency fixes

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  Elizafox

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  abc7b1a

• Merge

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  ad73863

Commits on Jul 27, 2023

• Merge pull request #1 from Elizafox/loader

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  johentsch

  authored
  9a22e76

• Revert "Merge"

  Show description for 7e0c2a2
  johentsch

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  7e0c2a2

Commits on Sep 9, 2023

• enable dc.PackageLoader convenience

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• updates package requirements

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  18c0c53

• Resource.from_descriptor() dispatches to DimcatResource for all fl.Package.type == "table"

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  7cb2dc2

• Resource.from_descriptor() dispatches to PathResource if fl.Package.type != "table", unless used by a subclass

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  63c7380

• adds Dataset.from_package() constructor

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• updates pre-commit hook versions

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  b7dc50a

• renames .get_resource() => get_resource_by_name(); maintains custom metadata from package descriptor

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  bf4869e

• adds and executes tox lint

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  c217591

• introduces MuseScorePackage and MuseScoreFacet. Initializing from a package descriptor with 'creator' == 'ms3' (but no 'dtype') defaults to MuseScorePackage

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• DimcatCatalog.summary_dict() displays resource types by default

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• MuseScoreFacet dispatches to subclass based on resource name

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• introduces Facet base class with 'extractable_features' class variable

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• adds properties and methods to Package, updates .extract_feature()

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  3470963

Commits on Sep 17, 2023

• correct compilation of descriptor dict

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  7d39eef

• updates MWE datapackage with dcml_corpora@a2afd8b via ms3 v2.2.1

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  55b3862

• adds Package.get_resources_by_regex() and .get_resources_by_type(), and adapts .get_metadata()

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• copies HarmonyLabels.__init__() from DimcatResource

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  28b1778

• renames package analyzer => analyzers

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• renames package extractor => extractors

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• renames package grouper => groupers

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  7158017

• renames package pipeline => pipelines

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  7f423fa

• renames package slicer => slicers

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  79afa6d

• renames package catalog => catalogs

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  261ec7b

• renames package dataset => datasets

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• renames package package => packages

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  e534ed8

• renames package resource => resources

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  3020ad8

• adapts MWE notebook imports

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  12db382

• code cells with ipython3

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  7e9b23e

• updates status after creating resource from dataframe

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  e8d2dd0

• small bugfix important for Resource._get_current_status()

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• docstrings

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  21fa7bb

• update unittest_metarepo commit and adapts filepaths

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  2985ba9

Commits on Sep 18, 2023

• elaborates on resources.utils.infer_schema_from_df() and uses it in DimcatResource.from_df()

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• adds new 'context_columns' setting

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• adds mechanism that, fundamentally, initializes a Feature as a subset of another DimcatResource

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  7f46539

Commits on Sep 26, 2023

• adds options_class property to DimcatConfig

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  14f1d81

• pulls ClassVar extrable_features up to DimcatResource; adds ClassVar _auxiliary_columns to Feature base class

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  253356e

• enables FeatureExtractor to work on a single DimcatResource

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• corrects circular import

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• pulls the mechanism __repr__()/__str__() -> info() -> summary_dict() up to DimcatObject

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• accessing ClassVar DimcatResource._extractable_features via property

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• ignores exceptions when sending an extracted feature through the Dataset's pipeline. Right now this avoids, first of all, running any FeatureExtractors on the Feature, which could also be solved di…

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• adds debugging.py

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Commits on Oct 2, 2023

• enables loading boolean columns even if they come as floats

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• adds Measure feature

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  4372db3

• uses ms3 string parsers when loading columns that come with the corresponding ms3 regEx pattern constraint

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• relaxes requirements

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Commits on Oct 3, 2023

• better conversion to bool when loading tables

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Commits on Oct 12, 2023

• adds .krn to music21-parseable formats

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  afb854c

• adds Feature._transform_resource_df() and lets HarmonyLabels compute 'global_mode' and 'local_mode' columns

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  6624b79

• adds rudimentary ModeGrouper

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  3960f74

• updates MWE datapackage

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  fa5507f

• prevents FeatureExtractor from copying Features that have been freshly extracted via ._iter_features() called by ._process_dataset(). Creation of new Feature only required when .process_resource() …

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  67546eb

• cleans up PipelineStep._pre_process_resource() by moving ensure_level_named_piece() into DimcatResource.df and Feature.df and by moving the resource.load() activation to the Analyzer.

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  johentsch

  committed
  254636f

• properly disentangles DimcatResource.get_default_groupby() (which wrongly defaulted to the piece-grouping level) from DimcatResource.get_grouping_levels() which now comes with the 'smallest_unit' a…

  Show description for 5d62725
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  5d62725

Commits on Oct 13, 2023

• appends Feature name to resource_name in Package.extract_feature()

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  3e419a8

• factors out computation of (renamed) globalkey_mode and localkey_mode

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  29194fb

• adds resources.utils.make_adjacency_groups() and its helper make_adjacency_mask()

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  c9a535f

• skips FeatureExtractors when Dataset sends extracted Feature through its Pipeline

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  fe8dbc4

• Feature.df calls self._make_feature_df() only for freshly loaded resources; ensure_level_named_piece() moved to .get_dataframe(), following the same rationale

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  3f0005b

• correctly condenses KeyAnnotations (currently it is assumed they are always created from HarmonyLabels)

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  63d49a9

• has Groupers skip resources that cannot be grouped and warn about them

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  402ae9e

• adds CorpusGrouper and has DimcatResource.update_default_groupby() deal with pre-existing level name

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  6395d54

• adds DimcatCatalog.get_resource methods parallelling those of Package

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  ebe02b4

• allows resource.utils.condense_dataframe_by_groups() to drop rows with missing 'duration_qb' column

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Commits on Oct 14, 2023

• make deserialization functions available for import

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Commits on Oct 23, 2023

• replaces typing_extensions.Self with Dataset

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  c95b99c

• updates dcml_corpora datapackage with ms3 2.4.0

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  79feb73

• more consistent package names when using MuseScoreLoader.from_ms3()

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  428d514

• adds PipelineStep.uml draft diagram

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Commits on Nov 1, 2023

• introduces the high-level facet types Events, Controls, Annotations, Structure; adds MuseScoreChords facet and Articulation feature

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• adds dimcat.base.is_instance_of()

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  d10d357

• allows a second argument for FeatureUnavailableError

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  a2e7451

• moves feature extraction from Package to DimcatResource, allowing for facets and features to implement their own logic of how a requested feature is to be computed (rather than leaving the sole res…

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  5c832be

• factors out make_bar_plot() from resources/results.py to dimcat.plotting and moves the contents from resources.plotting there, too

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  1de3a97

• adds ClassVar DimcatResource.default_value_column and property value_column

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  fa85bb3

• moves notebooks.utils.plot_pitch_class_distribution() and tpc_bubbles() to dimcat.plotting

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  e77f00e

• adapts Durations.make_bubble_plot()

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  31025f2

• PitchClassVectors analyzer is a special case of the Proportions analyzer

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  9ca3b94

• makes plot_fifths_distribution() (previously fifths_bar_plot()) a special case of make_bar_plot()

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  38cf3f2

• adds TypeAlias StepSpecs for 'steps' argument and function step_sepcs2step() to resolve them. Also, Pipeline._process_resource() now calls PipelineStep._process_resource()

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• adds methods apply_steps(), and plot() to DimcatResource, the latter using the new ClassVar "default_analyzer"

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  cbd9744

• factors out make_plot_settings() and update_figure_layout() from make_bar_plot() and adds an analogous make_scatter_plot()

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  ea967c9

• refactors make_tpc_bubble_plot() (previously tpc_bubbles()) as a special case of the new make_bubble_plot()

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  189c753

• new Result type PitchClassDuration as special case of Duration created by PitchClassVectors, which now is the default analyzer for Notes

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Commits on Nov 2, 2023

• resolve basepath derived from path argument

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  b2eb5f8

• adds 'piece' index level when loading an individual resource

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  b711d74

• analyzers pass on their default_groupby and value_column

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  ae1e109

• systematically lets .plot() return a bubbles plot and .plot_grouped() a bar plot

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  b1444fd

• euqalizes docstrings for 'level_names' argument

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  38e26ca

• renames make_tpc_bubble_plot() => make_lof_bubble_plot() and plot_fifths_distribution() => make_lof_bar_plot()

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  6844921

• moves get_middle_composition_year() to dimcat.utils

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  202e675

• in DimcatResource.from_dataframe(), the default_groupby can be set only when the dataframe is in place and the status updated

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  86e7f30

• adds YearGrouper() and allows CustomPieceGrouper() to be initialized without grouping (throwing a warning when grouping is not set up at processing time)

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  51850b4

• allows importing the modules directly "from dimcat" (rather than having to add "from dimcat.steps" or "from dimcat.data")

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  a01e6ef

• when Grouper has been applied, Result.plot() results in bubble plot, too, not in a bar plot

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  38f4d27

• moves write_image() to dimcat.plotting

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Commits on Nov 3, 2023

• sets default figure font size to 20

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  217bbfd

• reorganizes grouper modules, adds general ColumnGrouper, makes ModeGrouper a special case of it, adds MeasureGrouper

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  7ef34c8

• improves plotting to the point that the line_of_fifths.md notebook works with the revamped DiMCAT

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  ff438d5

Commits on Nov 4, 2023

• returns metadata facet, not bare dataframe

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• for Features, default_value_column defaults to _feature_columns[0] if not set

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Commits on Nov 5, 2023

• adds Result.combine() and beginning of HarmonyLabelsFormat

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• KeyAnnotations are also displayed with the corresponding mode

  johentsch

  committed
  394d177

• omits superfluous localkey_resolved_mode column because it's identical with localkey_mode

  johentsch

  committed
  74c2410

• KeyAnnotations are also displayed with the corresponding mode

  johentsch

  committed
  f9e4ce0

• adds NgramAnalyzer and BigramAnalyzer

  johentsch

  committed
  1e5adb7

• adds result getters to AnalyzedDataset, analogous to resource getters for package

  johentsch

  committed
  09127a0

• makes original resource available to PipelineStep._post_process_result()

  johentsch

  committed
  6c3d7b1

• adds NgramTable.make_ngram_tuples()

  johentsch

  committed
  ac3ede0

• more precise NgramTableFormat

  johentsch

  committed
  06a7eda

• adapts column schema after extending feature df

  johentsch

  committed
  5eb4b64

Commits on Nov 6, 2023

• moves transition_matrix() to dimcat.utils and make_transition_heatmap_plots() to dimcat.plotting

  johentsch

  committed
  d592330

• adds make_bigram_tuples(), get_transitions(), and plot_grouped() for NgramTable

  johentsch

  committed
  b96166a

• updates dependencies

  johentsch

  committed
  3ea4ee6

• renames DEGREE => SCALE_DEGREE

  johentsch

  committed
  af1bc9c

• pulls Grouper._iter_resources() up

  johentsch

  committed
  d7c534d

• DimcatResource gets the methods get_time_spans(), get_slice_intervals(), apply_slice_intervals(), relevant for slicing

  johentsch

  committed
  3e2c68e

• introduces the base Slicer

  johentsch

  committed
  69bce05

Commits on Nov 7, 2023

• more robust creation and loading of feature dfs

  johentsch

  committed
  7d416de

• factors out ResourceTransformation and makes Grouper and Slicer a subclass of it

  johentsch

  committed
  effb304

• adds Dataset.load() and get_feature() without argument (to get the last added)

  johentsch

  committed
  513fc58

• more consistent auxiliary columns

  johentsch

  committed
  e0451ad

• enables initializing DimcatConfig with just a string as positional argument, which is intepreted as dtype

  johentsch

  committed
  cfa64a8

• adds AdjacencySlicer and KeySlicer

  johentsch

  committed
  d4cfd6f

• Merge pull request #2 from johentsch/plotting

  Show description for 5fa0ff2
  johentsch

  authored
  5fa0ff2