This GitHub repository is a protocol repository containing the necessary libraries and protocols for all DAMP-Aquarium Workflows as of 3/22/2022.
Workflows can be shared among the Aquarium community. A workflow consists of a set of Operation Types, Protocols, Code Libraries, Sample Type definitions, and Container definitions. Workflows are stored in files ending with .aq.
Additional information about Aquarium can be found here
To import a workflow, go to the drop-down menu located at the top left of the Aquarium interface, select Import Workflows. Click LOAD and choose the .aq file from your local computer.
Note: It's a good practice to make a back up of your Aquarium database before importing a workflow. At this time, there is no easy way to un-import in Aquarium.
Additional importing instruction can be found under Community / Importing
To export a workflow, go to the drop-down menu located at the top left of the Aquarium interface, select Export Workflows. Select the operation types and libraries for export under the Workflow Components panel.
There are two ways to export workflows, one is generating a simple workflow (.aq) file, or you can generate an entire Github repository and webpage for your workflow.
Additional exporting instruction can be found under Community / Exporting
- Rita R. Chen - rychen58