Capitalized BIDS everywere #24
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| name: integration test | |
| on: push | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: ["3.6", "3.7", "3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install xlrd==1.2.0 openpyxl | |
| pip install flake8 wheel | |
| pip install . | |
| - name: instalation test | |
| run: | | |
| cd | |
| bidsme --help | |
| - name: lint with flake8 | |
| run: | | |
| flake8 . | |
| - name: getting Test DS | |
| run: | | |
| cd | |
| git clone https://github.com/CyclotronResearchCentre/bidsme_examples.git | |
| cd bidsme_examples/example1 | |
| - name: preparation | |
| run: | | |
| cd ~/bidsme_examples/example1 | |
| bidsme prepare source/ renamed/ -r nii=MRI --part-template resources/participants.json --plugin resources/plugins/rename_plugin.py | |
| - name: mapping | |
| run: | | |
| cd ~/bidsme_examples/example1 | |
| bidsme map renamed/ bids/ --plugin resources/plugins/bidsify_plugin.py -b resources/map/bidsmap.yaml | |
| - name: process | |
| run: | | |
| cd ~/bidsme_examples/example1 | |
| bidsme process renamed/ bids/ --plugin resources/plugins/process_plugin.py -b resources/map/bidsmap.yaml | |
| - name: bidsfify | |
| run: | | |
| cd ~/bidsme_examples/example1 | |
| bidsme bidsify renamed/ bids/ --plugin resources/plugins/bidsify_plugin.py -b resources/map/bidsmap.yaml |