Add install.R to include additional R packages #6
Workflow file for this run
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| name: Build and push container image | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'conda-linux-64.lock' | |
| - 'environment.yml' | |
| - 'install.R' | |
| - 'Dockerfile' | |
| # Trigger rebuilds if the build process changes | |
| - '.github/workflows/build.yaml' | |
| pull_request: | |
| jobs: | |
| build-and-push: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # For biggish images, github actions runs out of disk space. | |
| # So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use | |
| # https://github.com/actions/virtual-environments/issues/2606#issuecomment-772683150 | |
| # and https://github.com/easimon/maximize-build-space/blob/b4d02c14493a9653fe7af06cc89ca5298071c66e/action.yml#L104 | |
| # This gives us a total of about 52G of free space, which should be enough for now | |
| - name: cleanup disk space | |
| run: | | |
| sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc | |
| df -h | |
| - name: Checkout files in repo | |
| uses: actions/checkout@main | |
| - name: Build and push the image to quay.io | |
| uses: jupyterhub/repo2docker-action@master | |
| with: | |
| # Make sure username & password/token pair matches your registry credentials | |
| DOCKER_USERNAME: ${{ secrets.QUAY_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.QUAY_PASSWORD }} | |
| DOCKER_REGISTRY: "quay.io" | |
| # Disable pushing a 'latest' tag, as this often just causes confusion | |
| LATEST_TAG_OFF: true | |
| IMAGE_NAME: "cryointhecloud/cryo-hub-r-image" | |
| # Put repo contents in /srv/repo, so they aren't mangled when we put user home in /home/jovyan | |
| REPO_DIR: /srv/repo | |
| # Lets us monitor disks getting full as images get bigger over time | |
| - name: Show how much disk space is left | |
| run: df -h |