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19 Open 271 Closed
19 Open 271 Closed
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Issues list

[BUG] sqantie_qc.py report generation triage For developers to check
#363 opened Dec 10, 2024 by wdesaintjean
2 tasks done
4
[BUG] sqanti3_qc.py :: use sys.executable instead of plain python3 call for inner command triage For developers to check
#354 opened Nov 19, 2024 by EricDeveaud
1 of 2 tasks
2
[BUG] qanti3_filter.py :: invalid Rscript detection triage For developers to check
#353 opened Nov 19, 2024 by EricDeveaud
1 of 2 tasks
Alternative tools for orf prediction triage For developers to check
#347 opened Nov 8, 2024 by YIGUIz
2 tasks done
[BUG] Running SQANTI3_QC with chunks and no chunks produces differences in classification.txt bug Something isn't working enhancement New feature or request QC SQ3 Quality Control related issues
#340 opened Oct 8, 2024 by Fabian-RY
2 tasks done
@Fabian-RY
[BUG] sqanti3_filter.py is not filtering according to my custom rules rules filter SQ3 rules filter related issues
#322 opened Sep 3, 2024 by dudududu12138
2 tasks done
1
sqanti3_rescue - tags transcript_id, gene_id are absent from the attribute field [BUG] rescue SQ3 rescue-related issues
#317 opened Aug 2, 2024 by cathycoutu
2 tasks done
1
default rule filter also filtered out mono-exonic transcripts rules filter SQ3 rules filter related issues
#282 opened Apr 2, 2024 by MengjunWu
2 tasks done
Having output of examples check into git is problematic enhancement New feature or request
#276 opened Mar 24, 2024 by diekhans
2 tasks done
BAM/SAM input option enhancement New feature or request
#274 opened Mar 21, 2024 by carolinamonzo
@TianYuan-Liu
1
Alternative tools for orf prediction enhancement New feature or request
#239 opened Nov 6, 2023 by kdm9
1
CDS not annotated using isoAnnotLite IsoAnnotLite IsoAnnotLite related issues question Further information is requested
#230 opened Sep 25, 2023 by Ajay-097
8
Option to write TSV for each report table enhancement New feature or request
#218 opened Aug 24, 2023 by diekhans
2
understanding the dup isoforms in the classification file QC SQ3 Quality Control related issues question Further information is requested
#216 opened Aug 23, 2023 by alexyfyf
2
sqanti hides import errors and makes it hard to debug enhancement New feature or request
#212 opened Aug 12, 2023 by diekhans
RTS_stage issue QC SQ3 Quality Control related issues question Further information is requested
#197 opened Jun 1, 2023 by kehming
Provide SQANTI3 as bioconda package enhancement New feature or request Installation Installation-related issues
#180 opened Jan 24, 2023 by caspargross
1
Error in simpleLoess bug Something isn't working QC SQ3 Quality Control related issues
#164 opened Aug 4, 2022 by sum732
3
Default output should not be so verbose enhancement New feature or request
#61 opened May 25, 2021 by SichongP
1
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