Initial Release of the DecompPipeline
This is the initial release of the DecompPipeline. It provides basic functionality to preprocess DNA methylation data for analysis with MeDeCom, including three steps:
(i) Filtering CpG sites according to reliability (both for array-based data prepare_data
and BS data prepare_data_BS
).
(ii) Selecting CpG subsets for downstream analysis (prepare_CG_subsets
).
(iii) Starting MeDeCom runs using start_medecom_analysis
.
DecomPipeline also creates outputs that can be read by FactorViz for further exploration of deconvolution results in a shiny-based interface.