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Fix #76 - revert to output unannotated loci #78

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merged 1 commit into from
Sep 26, 2024
Merged

Fix #76 - revert to output unannotated loci #78

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3 changes: 2 additions & 1 deletion CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,9 @@ This project adheres to [Semantic Versioning](http://semver.org/).
- Use codecov badge and fix scout link on README page
- Added a test for TRGT MCs set to `.`
- Added CLI test for TRGT file
- Fix codecov upload hidden artifact issue
- Codecov upload hidden artifact issue
- Incorrect multisample, multiallele FORMAT output
- Write unannotated entries (not in definition file) to output (reverted to pre-0.9 behaviour)

## [0.9.1]
### Added
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2 changes: 1 addition & 1 deletion stranger/cli.py
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@@ -1,7 +1,7 @@
import gzip
import logging
from codecs import getreader, open
from pprint import pprint as pp

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unused import 'pp' (90% confidence)

import click
import coloredlogs
Expand All @@ -24,7 +24,7 @@
LOG_LEVELS = ["DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"]


def print_version(ctx, param, value):

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unused variable 'param' (100% confidence)
if not value or ctx.resilient_parsing:
return
click.echo(__version__)
Expand Down Expand Up @@ -211,4 +211,4 @@
repeat_data[annotate_repeat_key]
)

click.echo(get_variant_line(variant_info, header_info))
click.echo(get_variant_line(variant_info, header_info))
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