Add a test for trgt uninformative MCs

Clinical-Genomics · Jul 2, 2024 · ec80336 · ec80336
1 parent be4533c
commit ec80336
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Showing 4 changed files with 10 additions and 0 deletions.
diff --git a/tests/cli/test_cli.py b/tests/cli/test_cli.py
@@ -19,3 +19,8 @@ def test_stranger_cli_zipped(vcf_zipped_path):
     runner = CliRunner()
     result = runner.invoke(cli, [vcf_zipped_path])
     assert result.exit_code == 0
+
+def test_stranger_trgt_dot_mc(vcf_trgt_path_dot_mc):
+    runner = CliRunner()
+    result = runner.invoke(cli, ["--trgt", vcf_trgt_path_dot_mc])
+    assert result.exit_code == 0
diff --git a/tests/conftest.py b/tests/conftest.py
@@ -15,6 +15,11 @@ def vcf_zipped_path():
     return "tests/fixtures/643594.clinical.str.vcf.gz"
 
 
+@pytest.fixture()
+def vcf_trgt_path_dot_mc():
+    return "tests/fixtures/HG002_Revio.sort.vcf.gz"
+
 @pytest.fixture()
 def repeats_file_handle():
     return open(repeats_path, "r")
+
diff --git a/tests/fixtures/HG002_Revio.sort.vcf.gz b/tests/fixtures/HG002_Revio.sort.vcf.gz
diff --git a/tests/fixtures/HG002_Revio.sort.vcf.gz.tbi b/tests/fixtures/HG002_Revio.sort.vcf.gz.tbi