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Minor release 4.96 (#5203)
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* Isort with isort 6.0

* Version 4.96

* Fix typo in changelog

* edit changelog

---------

Co-authored-by: Chiara Rasi <[email protected]>
Co-authored-by: Daniel Nilsson <[email protected]>
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3 people authored Jan 28, 2025
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12 changes: 7 additions & 5 deletions CHANGELOG.md
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Expand Up @@ -4,18 +4,20 @@ This project adheres to [Semantic Versioning](http://semver.org/).

About changelog [here](https://keepachangelog.com/en/1.0.0/)

## [unreleased]
## [4.96]
### Added
- Support case status assignment upon loading (by providing case status in the case config file)
- Severity predictions on general case report for SNVs and cancer SNVs
- Variant functional annotation on general case report for SNVs and cancer SNVs
- Version of Scout used when the case was loaded is displayed on case page and general report now
- Version of Scout used when the case was loaded is displayed on case page and general report
### Removed
- Discontinue ClinVar submissions via CSV files and support only submission via API: removed buttons for downloading ClinVar submission objects as CSV files
### Changed
- Display STR variant filter status on corresponding variantS page
- Discontinue ClinVar submissions via CSV files and support only submission via API: removed buttons for downloading ClinVar submission objects as CSV files.
- Warning and reference to Bieseker et al Biesecker when using PP1/BS4 and PP4 in ACMG classifications
- Warning to not to use PP4 criterion together with PS2/PM6 in ACMG classifications with reference to the SVI Recommendation for _De Novo_ Criteria (PS2 & PM6)
- Warning and reference to Biesecker et al when using PP1/BS4 and PP4 together in ACMG classifications
- Warning to not use PP4 criterion together with PS2/PM6 in ACMG classifications with reference to the SVI Recommendation for _de novo_ Criteria (PS2 & PM6)
- Button to directly remove accepted submissions from ClinVar
- Upgraded libs in uv.lock file
### Fixed
- Release docs to include instructions for upgrading dependencies
- Truncated long HGVS descriptions on cancer SNV and SNVs pages
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2 changes: 1 addition & 1 deletion pyproject.toml
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@@ -1,6 +1,6 @@
[project]
name = "scout-browser"
version = "4.95.0"
version = "4.96.0"
description = "Clinical DNA variant visualizer and browser"
authors = [{name="Chiara Rasi", email="[email protected]"}, {name="Daniel Nilsson", email="[email protected]"}, {name="Robin Andeer", email="[email protected]"}, {name="Mans Magnuson", email="[email protected]"}]
license = {text = "MIT License"}
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