v0.94.3

Oceananigans v0.94.3

Diff since v0.94.2

Merged pull requests:

• Reduce parameter space for velocity tendency kernels (#3924) (@simone-silvestri)
• Leftover from split explicit refactor (#3931) (@simone-silvestri)
• CompatHelper: bump compat for StructArrays to 0.7, (keep existing compat) (#3934) (@github-actions[bot])
• (0.94.3) Vector rotation for immersed boundary grids (#3939) (@simone-silvestri)
• Bugfix in compute bottom height (#3940) (@simone-silvestri)
• Better message for regularize_immersed_boundary_condition (#3942) (@navidcy)
• Fix a typo in show(io, Simulation) (#3944) (@glwagner)

v0.94.2

Oceananigans v0.94.2

Diff since v0.94.1

Merged pull requests:

• (0.94.2) Support interpolation from triple-Flat grids (#3928) (@glwagner)

v0.94.1

Oceananigans v0.94.1

Diff since v0.94.0

v0.94.0

Oceananigans v0.94.0

Diff since v0.93.3

Merged pull requests:

• Implement scale-invariant dynamic Smagorinsky (#3642) (@tomchor)
• Open halo filling on Windowed fields (#3834) (@simone-silvestri)
• static_column_depth interface and numerical bottom height in AbstractGridFittedBottom (#3841) (@simone-silvestri)
• (0.94.0) Refactor exported names (#3872) (@glwagner)
• Bugfix in distributed GPU tests and Distributed set! (#3880) (@simone-silvestri)
• Correct error message in validate_lat_lon_grid_args (#3887) (@simone-silvestri)
• Fix fft_poisson_solver constructor (#3890) (@glwagner)
• Use launch! for particle advection (#3891) (@glwagner)
• Mask ReducedFields accounting the immersed column (#3900) (@simone-silvestri)
• For output readers, make reader_kw default to an empty NamedTuple (#3902) (@ali-ramadhan)
• Fix equation rendering in boundary_conditions.md (#3906) (@jbisits)
• Dont adapt Flat direction advection scheme plus better summary for FluxFormAdvection (#3908) (@glwagner)
• Remove redundant advection aliases (#3912) (@simone-silvestri)
• Remove fill_halo_regions! specific kwargs from launch! (#3922) (@simone-silvestri)

Closed issues:

• More / more flexible Smagorinsky models (#3637)
• Open boundary conditions do not work for windowed fields (#3833)
• Error in ConjugateGradientPoissonSolver for nonuniform grids (#3889)
• The MPI we use in the distributed tests is not CUDA-aware (#3897)
• Use default reader_kw=nothing to make FieldTimeSeries concretely typed (#3898)
• Plotting a reduced field on an ImmersedBoundaryGrid fills in NaNs incorrectly (#3899)
• LaTeX not rendering in boundary_conditions.md (#3905)
• MakieExt having trouble with sliced fields? (#3921)

v0.93.3

Oceananigans v0.93.3

Diff since v0.93.2

Merged pull requests:

• Add test of enzyme flux bc (#3643) (@jlk9)
• Fix docs for VectorInvariant and WENOVectorInvariant (#3866) (@navidcy)
• Use on_architecture more liberally with boundary conditions (#3893) (@glwagner)
• Update examples to use new fluxes notation (#3907) (@glwagner)

Closed issues:

• "GPU enzyme tests are on the CPU (#3909)

🐧 v0.93.2

Oceananigans v0.93.2

Diff since v0.93.1

Merged pull requests:

• Topology-aware operators (#3268) (@simone-silvestri)
• Allow FieldTimeSeries to pass keyword arguments to jldopen (#3739) (@ali-ramadhan)
• (0.93.2) Update Adapt.jl compat and fix Float32 CATKE on GPU (#3876) (@ali-ramadhan)
• Include vector rotation in other test (#3881) (@simone-silvestri)

Closed issues:

• Support passing keyword arguments to jldopen when using FieldTimeSeries (#3680)
• CUDA illegal memory access when constructing a Float32 HydrostaticFreeSurfaceModel + CATKEVerticalDiffusivity on the GPU (#3870)

v0.93.1

Oceananigans v0.93.1

Diff since v0.93.0

Merged pull requests:

• Fix bug calling domain for LatitudeLongitudeGrid (#3871) (@glwagner)

v0.93.0

Oceananigans v0.93.0

Diff since v0.92.2

Merged pull requests:

• Correct vorticity computation at the corners of cubed sphere panels (#3325) (@siddharthabishnu)
• Fixes bug in FlatExtrapolation matching scheme (#3854) (@tomchor)
• (0.93.0) Use with_halos=true default for JLD2OutputWriter (#3860) (@glwagner)
• More specific ConformalCubedSpherePanel type (#3868) (@navidcy)
• Clean up redundant errors in FieldTimeSeries (#3869) (@glwagner)

Closed issues:

• Circulation and vorticity operators need to be updated at the cubed sphere corners (#1584)

v0.92.2

Oceananigans v0.92.2

Diff since v0.92.1

Merged pull requests:

• Temporary support for OrthogonalSphericalShellGrid for MakieExt (#3824) (@glwagner)
• Add papers using Oceananigans (#3861) (@navidcy)
• Correct accessing velocities from the background field (#3862) (@liuchihl)
• (0.92.2) Add more advection scheme tests; fix order adapting with tracer-specific schemes; fix WENOVectorInvariant (#3864) (@glwagner)

Closed issues:

• Cannot build HydrostaticFreeSurfaceModel with different advection schemes for different tracers (#3863)
• Bug in WENOVectorInvariant constructor (#3865)

🦛 v0.92.1

Oceananigans v0.92.1

Diff since v0.92.0

Merged pull requests:

• Bug in NetCDF output for curvilinear immersed grids (#3666) (@simone-silvestri)
• Different advection schemes in different directions (#3732) (@simone-silvestri)
• CompatHelper: bump compat for JLD2 to 0.5, (keep existing compat) (#3769) (@github-actions[bot])
• Enzyme (performance) mark some functions as non-differentiable (#3799) (@wsmoses)
• New Base.axes for AbstractField (#3801) (@glwagner)
• Enforce gauge condition in preconditioners for ConjugateGradientPoissonSolver (#3802) (@glwagner)
• Bring back support for closure tuples with CATKE (#3805) (@glwagner)
• Implement with_number_type utility for grids plus clean up (#3809) (@glwagner)
• Fix formatting and adds back interior velocity in tilted bottom boundary layer example (#3813) (@tomchor)
• Simplify kernel launching and add exclude_periphery option (#3814) (@glwagner)
• Add method to permit creating BackgroundFields out of Numbers directly (#3815) (@tomchor)
• Implement interface for set! and use it to set! distributed fields better (#3817) (@glwagner)
• Support AbstractOperations with MakieExtension (#3823) (@glwagner)
• Don't return special length for PartlyInMemory time series (#3825) (@glwagner)
• Add ConformalMapping Type to OrthogonalSphericalShellGrid for Specialized Dispatch (#3832) (@siddharthabishnu)
• Default momentum advection for the HydrostaticFreeSurfaceModel (#3842) (@simone-silvestri)
• Solves bug when calling ConjugateGradientPoissonSolver without specifying preconditioner (#3846) (@tomchor)
• Refactoring for ImmersedBoundaries to take precedence over Solvers (#3847) (@simone-silvestri)
• Resolve precompilation of _advective_fluxes (#3853) (@simone-silvestri)
• Use generalized coordinate nodes instead of xyz nodes for Lagrangian particle advection (#3855) (@ali-ramadhan)
• (0.92.1) Tag v0.92.1 (#3858) (@ali-ramadhan)

Closed issues:

• Error when using ImmersedBoundaryGrid with HydrostaticModel and drag boundary condition (#2711)
• Halo inflation + restriction on halo size makes it impossible to run some problems (#3622)
• Error when using OpenBoundaryCondition with HydrostaticFreeSurfaceModel (#3628)
• Why do we need 4 halo points in the vertical for VectorInvariant(vertical_scheme=Centered())? (#3699)
• Reductions with FieldTimeSeries on an ImmersedBoundaryGrid are very slow (#3750)
• Automatically retry jobs on Buildkite (#3773)
• Error using closure tuples with CATKEVerticalDiffusivity (#3804)
• Error with default HydrostaticFreeSurfaceModel on TripolarGrid (#3806)
• set! cannot distribute global arrays (#3816)
• Cannot construct a ConjugateGradientPoissonSolver with a default preconditioner (#3829)
• Immediate NaNs running a non-hydrostatic model with an immersed boundary and open boundary conditions and immersed pressure solver (#3831)
• Cannot precompile Oceananigans due to method overwriting (#3851)
• Illegal memory access on CPU and GPU with LagrangianParticles + HydrostaticFreeSurfaceModel + LatitudeLongitudeGrid (#3852)