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Update nsforest_human_neocortex_global_subclass_resultsSource.tsv
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hkir-dev authored Nov 19, 2024
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cl_class cl_label Cell_type Marker_set Minimal_markers Minimal_markers_label Organ Species Species_abbv Organ_region Parent FBeta_confidence_score Marker_set_xref cxg_dataset_title CL_agreed
CL:0002605 astrocyte of the cerebral cortex Astro CLM:1000062 ensembl:ENSG00000234377 OBI1-AS1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.957043843 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells True
CL:4023036 chandelier pvalb GABAergic cortical interneuron Chandelier CLM:1000063 ensembl:ENSG00000174948|ensembl:ENSG00000178538 GPR149|CA8 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.799748111 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons True
CL:0000115 endothelial cell Endo CLM:1000064 ensembl:ENSG00000102755|ensembl:ENSG00000118777 FLT1|ABCG2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.923892465 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells True
CL:4030059 L2/3 intratelencephalic projecting glutamatergic neuron L2/3 IT CLM:1000065 ensembl:ENSG00000119547|ensembl:ENSG00000204262 ONECUT2|COL5A2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.670149932 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons True
CL:4030063 L4 intratelencephalic projecting glutamatergic neuron L4 IT CLM:1000066 ensembl:ENSG00000198963|ensembl:ENSG00000113532 RORB|ST8SIA4 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.720108696 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons True
CL:4023041 L5 extratelencephalic projecting glutamatergic cortical neuron L5 ET CLM:1000067 ensembl:ENSG00000124302|ensembl:ENSG00000185668 CHST8|POU3F1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.815891473 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons True
CL:4030064 L5 intratelencephalic projecting glutamatergic neuron L5 IT CLM:1000068 ensembl:ENSG00000180801|ensembl:ENSG00000198963|ensembl:ENSG00000082482 ARSJ|RORB|KCNK2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.764261336 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons True
CL:4030067 L5/6 near-projecting glutamatergic neuron L5/6 NP CLM:1000069 ensembl:ENSG00000197085|ensembl:ENSG00000038295 NPSR1-AS1|TLL1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.899288218 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons True
CL:4023042 L6 corticothalamic-projecting glutamatergic cortical neuron L6 CT CLM:1000070 ensembl:ENSG00000082684|ensembl:ENSG00000178031|ensembl:ENSG00000137573 SEMA5B|ADAMTSL1|SULF1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.631898455 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons True
CL:4030065 L6 intratelencephalic projecting glutamatergic neuron L6 IT CLM:1000071 ensembl:ENSG00000256193|ensembl:ENSG00000172673 LINC00507|THEMIS Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.641695703 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons True
CL:4030068 L6 intratelencephalic projecting Car3 glutamatergic neuron L6 IT Car3 CLM:1000072 ensembl:ENSG00000115593|ensembl:ENSG00000172673 SMYD1|THEMIS Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.877752028 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons True
CL:4023046 L6b glutamatergic neuron of the primary motor cortex L6b CLM:1000073 ensembl:ENSG00000118523|ensembl:ENSG00000047936 CCN2|ROS1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.819940964 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons False
CL:4023011 lamp5 GABAergic cortical interneuron Lamp5 CLM:1000074 ensembl:ENSG00000235665|ensembl:ENSG00000157404 LINC00298|KIT Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.814687838 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons False
CL:4042013 Lamp5 Lhx6 neuron Lamp5 Lhx6 CLM:1000075 ensembl:ENSG00000154080|ensembl:ENSG00000125869 CHST9|LAMP5 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.821678322 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons False
CL:0000129 microglial cell Micro/PVM CLM:1000076 ensembl:ENSG00000077420|ensembl:ENSG00000107099 APBB1IP|DOCK8 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.955105634 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells False
CL:0002453 oligodendrocyte precursor cell OPC CLM:1000077 ensembl:ENSG00000101311 FERMT1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.741071429 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells False
CL:0000128 oligodendrocyte Oligo CLM:1000078 ensembl:ENSG00000147488|ensembl:ENSG00000123560 ST18|PLP1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.97185637 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells False
CL:4042032 Pax6 GABAergic cortical interneuron Pax6 CLM:1000079 ensembl:ENSG00000189056|ensembl:ENSG00000137252 RELN|HCRTR2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.724125093 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons False
CL:4023018 pvalb GABAergic cortical interneuron Pvalb CLM:1000080 ensembl:ENSG00000100362|ensembl:ENSG00000006128|ensembl:ENSG00000167306 PVALB|TAC1|MYO5B Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.691998764 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons False
CL:4023015 sncg GABAergic cortical interneuron Sncg CLM:1000081 ensembl:ENSG00000143171|ensembl:ENSG00000144229 RXRG|THSD7B Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.628943702 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons False
CL:4023017 sst GABAergic cortical interneuron Sst CLM:1000082 ensembl:ENSG00000157005|ensembl:ENSG00000114805 SST|PLCH1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.842367005 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons False
CL:4023121 sst chodl GABAergic cortical interneuron Sst Chodl CLM:1000083 ensembl:ENSG00000122585 NPY Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.894026187 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons False
CL:4023051 vascular leptomeningeal cell VLMC CLM:1000084 ensembl:ENSG00000249669 CARMN Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.863105175 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells False
CL:4023016 vip GABAergic cortical interneuron Vip CLM:1000085 ensembl:ENSG00000146469 VIP Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.855531344 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons False
CL:0002605 astrocyte of the cerebral cortex Astro CLM:1000062 ensembl:ENSG00000234377 OBI1-AS1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.957043843 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells FALSE
CL:4023036 chandelier pvalb GABAergic cortical interneuron Chandelier CLM:1000063 ensembl:ENSG00000174948|ensembl:ENSG00000178538 GPR149|CA8 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.799748111 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons TRUE
CL:0000115 endothelial cell Endo CLM:1000064 ensembl:ENSG00000102755|ensembl:ENSG00000118777 FLT1|ABCG2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.923892465 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells FALSE
CL:4030059 L2/3 intratelencephalic projecting glutamatergic neuron L2/3 IT CLM:1000065 ensembl:ENSG00000119547|ensembl:ENSG00000204262 ONECUT2|COL5A2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.670149932 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons TRUE
CL:4030063 L4 intratelencephalic projecting glutamatergic neuron L4 IT CLM:1000066 ensembl:ENSG00000198963|ensembl:ENSG00000113532 RORB|ST8SIA4 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.720108696 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons TRUE
CL:4023041 L5 extratelencephalic projecting glutamatergic cortical neuron L5 ET CLM:1000067 ensembl:ENSG00000124302|ensembl:ENSG00000185668 CHST8|POU3F1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.815891473 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons TRUE
CL:4030064 L5 intratelencephalic projecting glutamatergic neuron L5 IT CLM:1000068 ensembl:ENSG00000180801|ensembl:ENSG00000198963|ensembl:ENSG00000082482 ARSJ|RORB|KCNK2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.764261336 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons TRUE
CL:4030067 L5/6 near-projecting glutamatergic neuron L5/6 NP CLM:1000069 ensembl:ENSG00000197085|ensembl:ENSG00000038295 NPSR1-AS1|TLL1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.899288218 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons TRUE
CL:4023042 L6 corticothalamic-projecting glutamatergic cortical neuron L6 CT CLM:1000070 ensembl:ENSG00000082684|ensembl:ENSG00000178031|ensembl:ENSG00000137573 SEMA5B|ADAMTSL1|SULF1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.631898455 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons TRUE
CL:4030065 L6 intratelencephalic projecting glutamatergic neuron L6 IT CLM:1000071 ensembl:ENSG00000256193|ensembl:ENSG00000172673 LINC00507|THEMIS Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.641695703 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons TRUE
CL:4030068 L6 intratelencephalic projecting Car3 glutamatergic neuron L6 IT Car3 CLM:1000072 ensembl:ENSG00000115593|ensembl:ENSG00000172673 SMYD1|THEMIS Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.877752028 https://doi.org/10.5281/zenodo.11165918 Supercluster: IT-projecting excitatory neurons TRUE
CL:4023046 L6b glutamatergic neuron of the primary motor cortex L6b CLM:1000073 ensembl:ENSG00000118523|ensembl:ENSG00000047936 CCN2|ROS1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.819940964 https://doi.org/10.5281/zenodo.11165918 Supercluster: Deep layer (non-IT) excitatory neurons TRUE
CL:4023011 lamp5 GABAergic cortical interneuron Lamp5 CLM:1000074 ensembl:ENSG00000235665|ensembl:ENSG00000157404 LINC00298|KIT Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.814687838 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons TRUE
CL:4042013 Lamp5 Lhx6 neuron Lamp5 Lhx6 CLM:1000075 ensembl:ENSG00000154080|ensembl:ENSG00000125869 CHST9|LAMP5 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.821678322 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons TRUE
CL:0000129 microglial cell Micro/PVM CLM:1000076 ensembl:ENSG00000077420|ensembl:ENSG00000107099 APBB1IP|DOCK8 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.955105634 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells FALSE
CL:0002453 oligodendrocyte precursor cell OPC CLM:1000077 ensembl:ENSG00000101311 FERMT1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.741071429 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells FALSE
CL:0000128 oligodendrocyte Oligo CLM:1000078 ensembl:ENSG00000147488|ensembl:ENSG00000123560 ST18|PLP1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.97185637 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells FALSE
CL:4042032 Pax6 GABAergic cortical interneuron Pax6 CLM:1000079 ensembl:ENSG00000189056|ensembl:ENSG00000137252 RELN|HCRTR2 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.724125093 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons TRUE
CL:4023018 pvalb GABAergic cortical interneuron Pvalb CLM:1000080 ensembl:ENSG00000100362|ensembl:ENSG00000006128|ensembl:ENSG00000167306 PVALB|TAC1|MYO5B Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.691998764 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons TRUE
CL:4023015 sncg GABAergic cortical interneuron Sncg CLM:1000081 ensembl:ENSG00000143171|ensembl:ENSG00000144229 RXRG|THSD7B Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.628943702 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons TRUE
CL:4023017 sst GABAergic cortical interneuron Sst CLM:1000082 ensembl:ENSG00000157005|ensembl:ENSG00000114805 SST|PLCH1 Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.842367005 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons TRUE
CL:4023121 sst chodl GABAergic cortical interneuron Sst Chodl CLM:1000083 ensembl:ENSG00000122585 NPY Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.894026187 https://doi.org/10.5281/zenodo.11165918 Supercluster: MGE-derived interneurons TRUE
CL:4023051 vascular leptomeningeal cell VLMC CLM:1000084 ensembl:ENSG00000249669 CARMN Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.863105175 https://doi.org/10.5281/zenodo.11165918 Supercluster: Non-neuronal cells FALSE
CL:4023016 vip GABAergic cortical interneuron Vip CLM:1000085 ensembl:ENSG00000146469 VIP Brain NCBITaxon:9606 Human UBERON:0001950 SO:0001260 0.855531344 https://doi.org/10.5281/zenodo.11165918 Supercluster: CGE-derived interneurons TRUE

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