Skip to content

Commit

Permalink
Update NSForestMarkersSource.tsv
Browse files Browse the repository at this point in the history
  • Loading branch information
@AvolaAmg
AvolaAmg committed Sep 25, 2024
1 parent 5e9e86d commit 82eed91
Showing 1 changed file with 23 additions and 7 deletions.
30 changes: 23 additions & 7 deletions src/markers/NSForestMarkersSource.tsv
View file
Original file line number Diff line number Diff line change
@@ -1,7 +1,23 @@
class Cell_type Marker_set Minimal_markers Minimal_markers_label Organ Species Species_abbv Organ_region Parent FBeta_confidence_score Marker_set_xref CL_agreed
CL:4028006 alveolar type 2 fibroblast cell CL:4037001 ensembl:ENSG00000168079|ensembl:ENSG00000174807 SCARA5|CD248 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.85 https://doi.org/10.5281/zenodo.11165918 True
CL:4028004 alveolar type 1 fibroblast cell CL:4037002 ensembl:ENSG00000131471|ensembl:ENSG00000139329 AOC3|LUM Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.7 https://doi.org/10.5281/zenodo.11165918 True
CL:0000583 alveolar macrophage CL:4037003 ensembl:ENSG00000038945|ensembl:ENSG00000170323 MSR1|FABP4 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.8 https://doi.org/10.5281/zenodo.11165918 True
CL:4033041 CCL3-positive alveolar macrophage CL:4037004 ensembl:ENSG00000050730|ensembl:ENSG00000163735 TNIP3|CXCL5 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.67 https://doi.org/10.5281/zenodo.11165918 True
CL:4033042 metallothionein-positive alveolar macrophage CL:4037005 ensembl:ENSG00000100292|ensembl:ENSG00000164120 HMOX1|HPGD Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.41 https://doi.org/10.5281/zenodo.11165918 True
CL:0000000 cell CL:4037006 ensembl:ENSG00000166803|ensembl:ENSG00000171848|ensembl:ENSG00000175063|ensembl:ENSG00000137804 PCLAF|RRM2|UBE2C|NUSAP1 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.26 https://doi.org/10.5281/zenodo.11165918 False
class Cell_type Marker_set Minimal_markers Minimal_markers_label Organ Species Species_abbv Organ_region Parent FBeta_confidence_score Marker_set_xref CL_agreed
CL:4028006 alveolar type 2 fibroblast cell CL:4037001 ensembl:ENSG00000168079|ensembl:ENSG00000174807 SCARA5|CD248 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.85 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4028004 alveolar type 1 fibroblast cell CL:4037002 ensembl:ENSG00000131471|ensembl:ENSG00000139329 AOC3|LUM Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.7 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:0000583 alveolar macrophage CL:4037003 ensembl:ENSG00000038945|ensembl:ENSG00000170323 MSR1|FABP4 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.8 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4033041 CCL3-positive alveolar macrophage CL:4037004 ensembl:ENSG00000050730|ensembl:ENSG00000163735 TNIP3|CXCL5 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.67 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4033042 metallothionein-positive alveolar macrophage CL:4037005 ensembl:ENSG00000100292|ensembl:ENSG00000164120 HMOX1|HPGD Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.41 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:0000000 cell CL:4037006 ensembl:ENSG00000166803|ensembl:ENSG00000171848|ensembl:ENSG00000175063|ensembl:ENSG00000137804 PCLAF|RRM2|UBE2C|NUSAP1 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.26 https://doi.org/10.5281/zenodo.11165918 FALSE
CL:0002605 astrocyte of the cerebral cortex CL:4037007 OBI1-AS1 Brain NCBITaxon:9606 Human UBERON:0000956 0.95 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4023036 chandelier pvalb GABAergic cortical interneuron CL:4037008 GPR149|CA8 Brain NCBITaxon:9606 Human UBERON:0000956 0.79 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:0000115 endothelial cell CL:4037009 FLT1|ABCG2 Brain NCBITaxon:9606 Human UBERON:0000956 0.92 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4030059 L2/3 intratelencephalic projecting glutamatergic neuron CL:4037010 ONECUT2|COL5A2 Brain NCBITaxon:9606 Human UBERON:0000956 0.67 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4030063 L4 intratelencephalic projecting glutamatergic neuron CL:4037011 RORB|ST8SIA4 Brain NCBITaxon:9606 Human UBERON:0000956 0.72 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4023041 L5 extratelencephalic projecting glutamatergic cortical neuron CL:4037012 CHST8|POU3F1 Brain NCBITaxon:9606 Human UBERON:0000956 0.81 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4030064 L5 intratelencephalic projecting glutamatergic neuron CL:4037013 ARSJ|RORB|KCNK2 Brain NCBITaxon:9606 Human UBERON:0000956 0.76 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4030067 L5/6 near-projecting glutamatergic neuron CL:4037014 NPSR1-AS1|TLL1 Brain NCBITaxon:9606 Human UBERON:0000956 0.89 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4023042 L6 corticothalamic-projecting glutamatergic cortical neuron CL:4037015 SEMA5B|ADAMTSL1|SULF1 Brain NCBITaxon:9606 Human UBERON:0000956 0.63 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4030065 L6 intratelencephalic projecting glutamatergic neuron CL:4037016 LINC00507|THEMIS Brain NCBITaxon:9606 Human UBERON:0000956 0.64 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4030068 L6 intratelencephalic projecting Car3 glutamatergic neuron CL:4037017 SMYD1|THEMIS Brain NCBITaxon:9606 Human UBERON:0000956 0.87 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4023046 L6b glutamatergic neuron of the primary motor cortex CL:4037018 CCN2|ROS1 Brain NCBITaxon:9606 Human UBERON:0000956 0.81 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4023011 lamp5 GABAergic cortical interneuron CL:4037019 LINC00298|KIT Brain NCBITaxon:9606 Human UBERON:0000956 0.81 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:4042013 Lamp5 Lhx6 neuron CL:4037020 CHST9|LAMP5 Brain NCBITaxon:9606 Human UBERON:0000956 0.82 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:0000881 | CL:0000129 perivascular macrophage |microglial cell CL:4037021 APBB1IP|DOCK8 Brain NCBITaxon:9606 Human UBERON:0000956 0.95 https://doi.org/10.5281/zenodo.11165918 TRUE
CL:0002453 oligodendrocyte precursor cell CL:4037022 FERMT1 Brain NCBITaxon:9606 Human UBERON:0000956 0.74 https://doi.org/10.5281/zenodo.11165918 TRUE

0 comments on commit 82eed91

Please sign in to comment.