This is a simulation of optical block in an unmylenated axon in NEURON.
The code is currently in an early stage of development and it is likely that many parameters are not yet properly set; thus we recommend caution in interpreting any model results at this time.
To run the simulation, first open a shell window and compile the conductances (fhm1.mod) using nrnivmodl:
cd OpticalBlock
nrnivmodl
You can then run the code using NEURON, specifying which configuration file to use, e.g.:
nrngui nrnaxon.py demo_block.yaml
The above example will produce the file "demo_block.csv".
If you have R installed, Rscript on your path, and R yaml installed, you can build all of the figures by running
make
or individual results using make, e.g.
make demo_block.pdf
or
make demo_block.csv
This code is licensed under the GNU General Public License; see LICENSE.txt for details.