Added About and Contact tabs

CSAFE-ISU · Aug 15, 2024 · 7715674 · 7715674
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diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-# handwriter
+# Welcome
 
 
 Handwriter is designed to assist forensic examiners by analyzing

diff --git a/README.qmd b/README.qmd
@@ -1,5 +1,5 @@
 ---
-title: "handwriter"
+title: "Welcome"
 format: 
   html:
     css: csafe.css

diff --git a/_quarto/CITATION.md b/_quarto/CITATION.md
@@ -4,16 +4,18 @@
 To cite package ‘handwriterApp’ in publications use:
 
   Iowa State University of Science and Technology on behalf of its Center for
-  Statistics and Applications in Forensic Evidence, Reinders S (????).
+  Statistics and Applications in Forensic Evidence, Reinders S (2024).
   _handwriterApp: Shiny App for Handwriting Analysis in R_. R package version
-  1.0.0, <https://github.com/CSAFE-ISU/handwriterApp>.
+  1.0.0, commit bf9918f390d1ca23532e201f88e624564d1be8ec,
+  <https://github.com/CSAFE-ISU/handwriterApp>.
 
 A BibTeX entry for LaTeX users is
 
   @Manual{,
     title = {handwriterApp: Shiny App for Handwriting Analysis in R},
     author = {{Iowa State University of Science and Technology on behalf of its Center for Statistics and Applications in Forensic Evidence} and Stephanie Reinders},
-    note = {R package version 1.0.0},
+    year = {2024},
+    note = {R package version 1.0.0, commit bf9918f390d1ca23532e201f88e624564d1be8ec},
     url = {https://github.com/CSAFE-ISU/handwriterApp},
   }
 ```
diff --git a/_quarto/CSAFE-Tools_Stacked_white_cropped.png b/_quarto/CSAFE-Tools_Stacked_white_cropped.png
diff --git a/_quarto/_quarto.yml b/_quarto/_quarto.yml
@@ -8,6 +8,12 @@ website:
     left:
       - text: Home
         file: index.qmd
+      - text: About
+        file: about.qmd
+      - text: Contact
+        file: contact.qmd
+      - text: News
+        file: NEWS.md
       - text: License
         file: LICENSE.md
     right:

diff --git a/_quarto/about.qmd b/_quarto/about.qmd
@@ -0,0 +1,16 @@
+---
+title: "About"
+format: 
+  html:
+    css: csafe.css
+---
+
+<src "CSAFE-TOOLS_Horizontal.png">
+
+CSAFE Tools is a software suite of state-of-the-art statistical libraries designed to assist practitioners in analyzing forensic data. This work was developed in collaboration with the Center for Statistics and Applications in Forensic Evidence (CSAFE) at Iowa State University and Omni Analytics Group.
+
+The methods used in the handwriter package are open-source and transparent, as described in <cite><a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/sam.11488">Crawford, Berry, and Carriquiry (2020)</a></cite> and <cite><a href="https://projecteuclid.org/journals/annals-of-applied-statistics/volume-17/issue-2/A-rotation-based-feature-and-Bayesian-hierarchical-model-for-the/10.1214/22-AOAS1662.full">Crawford, Ommen, and Carriquiry (2023)</a></cite>. The underlying code of handwriter is available as a <a href='https://github.com/CSAFE-ISU/handwriter' target='_blank'>GitHub repository</a>. This repository contains the current development version of handwriter. The current version of handwriter is available on the <a href='https://cran.r-project.org/web/packages/handwriter/index.html' target='_blank'>Comprehensive R Archive Network (CRAN)
+
+## Bibliography
+- Crawford, Amy M., Nicholas S. Berry, and Alicia L. Carriquiry. 2020. <cite><a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/sam.11488">" A clustering method for graphical handwriting components and statistical writership analysis."</a></cite> Statistical Analysis and Data Mining: The ASA Data Science Journal 14 (1): 41–60. https://doi.org/10.1002/sam.11488.
+- Crawford, Amy M., Danica M. Ommen, and Alicia L. Carriquiry. 2023. <cite><a href="https://projecteuclid.org/journals/annals-of-applied-statistics/volume-17/issue-2/A-rotation-based-feature-and-Bayesian-hierarchical-model-for-the/10.1214/22-AOAS1662.full">"A rotation-based feature and Bayesian hierarchical model for the forensic evaluation of handwriting evidence in a closed set."</a></cite> The Annals of Applied Statistics 17 (2). https://doi.org/10.1214/22-AOAS1662.
diff --git a/_quarto/contact.qmd b/_quarto/contact.qmd
@@ -0,0 +1,19 @@
+---
+title: Contact
+format: 
+  html:
+    css: csafe.css
+---
+
+
+
+### Center for Statistics and Applications in Forensic Evidence
+195 Durham Center
+
+613 Morrill Road
+
+Ames, Iowa 50011
+
+\(515\) 294-7278
+
+<a href="[email protected]">[email protected]</a>
diff --git a/_quarto/csafe.css b/_quarto/csafe.css
@@ -1,6 +1,6 @@
+/* Get Montserrat font */
 @import url('https://fonts.googleapis.com/css2?family=Montserrat:ital,wght@0,100..900;1,100..900&display=swap');
 
-
 /* Define global colors. To use: 'var(--blue)' */
 :root {
   --blue: #003A70;
@@ -13,18 +13,17 @@
 
 }
 
-
 h1 {
   font-family: 'Montserrat', sans-serif;
-  font-weight: 700;
-  font-size: 36px;
+  font-weight: 100;
+  font-size: 40px;
   color: var(--purple);
 }
 
 h2 {
   font-family: 'Montserrat', sans-serif;
-  font-weight: 100;
-  font-size: 26px;
+  font-weight: 700;
+  font-size: 22px;
   color: var(--purple);
 }
 
@@ -45,19 +44,20 @@ html, body {
   height: 100%;
 }
 
-.navbar-nav {
-  overflow: hidden;
-  height: 70px;
-  align-items: flex-end;
-}
-
 /* Increase the navbar logo size */
 .navbar-brand img {
     max-height: 50px; /* Increase the max width as needed */
     width: auto;     /* Maintain aspect ratio */
     vertical-align: middle;
 }
 
+/* General settings for navbar */
+.navbar-nav {
+  overflow: hidden;
+  height: 70px;
+  align-items: flex-end; /* aligns navigation links to bottom */
+}
+
 /* Change the text color of the navbar tabs */
 .navbar-nav .nav-link {
     color: var(--ltgrey);
@@ -69,7 +69,7 @@ html, body {
   color: var(--dkgrey);
 }
 
-/* Change color of all links */
+/* Change default links color */
 a {
     color: var(--orange);
 }
@@ -82,4 +82,4 @@ a:hover {
 /* Change color of links when clicked (visited) */
 a:visited {
     color: var(--gold);
-}
+}
diff --git a/_quarto/freeze.rds b/_quarto/freeze.rds
diff --git a/_quarto/index.qmd b/_quarto/index.qmd
@@ -1,5 +1,5 @@
 ---
-title: "handwriter"
+title: "Welcome"
 format: 
   html:
     css: csafe.css

diff --git a/_quarto/quarto_website.yml b/_quarto/quarto_website.yml
@@ -9,6 +9,12 @@ website:
     left:
       - text: Home
         file: index.qmd
+      - text: About
+        file: about.qmd
+      - text: Contact
+        file: contact.qmd
+      - text: News
+        file: $ALTDOC_NEWS
       - text: License
         file: $ALTDOC_LICENSE
     right:

diff --git a/altdoc/CSAFE-Tools_Stacked_white_cropped.png b/altdoc/CSAFE-Tools_Stacked_white_cropped.png
diff --git a/altdoc/about.qmd b/altdoc/about.qmd
@@ -0,0 +1,16 @@
+---
+title: "About"
+format: 
+  html:
+    css: csafe.css
+---
+
+<src "CSAFE-TOOLS_Horizontal.png">
+
+CSAFE Tools is a software suite of state-of-the-art statistical libraries designed to assist practitioners in analyzing forensic data. This work was developed in collaboration with the Center for Statistics and Applications in Forensic Evidence (CSAFE) at Iowa State University and Omni Analytics Group.
+
+The methods used in the handwriter package are open-source and transparent, as described in <cite><a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/sam.11488">Crawford, Berry, and Carriquiry (2020)</a></cite> and <cite><a href="https://projecteuclid.org/journals/annals-of-applied-statistics/volume-17/issue-2/A-rotation-based-feature-and-Bayesian-hierarchical-model-for-the/10.1214/22-AOAS1662.full">Crawford, Ommen, and Carriquiry (2023)</a></cite>. The underlying code of handwriter is available as a <a href='https://github.com/CSAFE-ISU/handwriter' target='_blank'>GitHub repository</a>. This repository contains the current development version of handwriter. The current version of handwriter is available on the <a href='https://cran.r-project.org/web/packages/handwriter/index.html' target='_blank'>Comprehensive R Archive Network (CRAN)
+
+## Bibliography
+- Crawford, Amy M., Nicholas S. Berry, and Alicia L. Carriquiry. 2020. <cite><a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/sam.11488">" A clustering method for graphical handwriting components and statistical writership analysis."</a></cite> Statistical Analysis and Data Mining: The ASA Data Science Journal 14 (1): 41–60. https://doi.org/10.1002/sam.11488.
+- Crawford, Amy M., Danica M. Ommen, and Alicia L. Carriquiry. 2023. <cite><a href="https://projecteuclid.org/journals/annals-of-applied-statistics/volume-17/issue-2/A-rotation-based-feature-and-Bayesian-hierarchical-model-for-the/10.1214/22-AOAS1662.full">"A rotation-based feature and Bayesian hierarchical model for the forensic evaluation of handwriting evidence in a closed set."</a></cite> The Annals of Applied Statistics 17 (2). https://doi.org/10.1214/22-AOAS1662.
diff --git a/altdoc/contact.qmd b/altdoc/contact.qmd
@@ -0,0 +1,19 @@
+---
+title: Contact
+format: 
+  html:
+    css: csafe.css
+---
+
+
+
+### Center for Statistics and Applications in Forensic Evidence
+195 Durham Center
+
+613 Morrill Road
+
+Ames, Iowa 50011
+
+\(515\) 294-7278
+
+<a href="[email protected]">[email protected]</a>
diff --git a/altdoc/csafe.css b/altdoc/csafe.css
@@ -1,6 +1,6 @@
+/* Get Montserrat font */
 @import url('https://fonts.googleapis.com/css2?family=Montserrat:ital,wght@0,100..900;1,100..900&display=swap');
 
-
 /* Define global colors. To use: 'var(--blue)' */
 :root {
   --blue: #003A70;
@@ -13,18 +13,17 @@
 
 }
 
-
 h1 {
   font-family: 'Montserrat', sans-serif;
-  font-weight: 700;
-  font-size: 36px;
+  font-weight: 100;
+  font-size: 40px;
   color: var(--purple);
 }
 
 h2 {
   font-family: 'Montserrat', sans-serif;
-  font-weight: 100;
-  font-size: 26px;
+  font-weight: 700;
+  font-size: 22px;
   color: var(--purple);
 }
 
@@ -45,19 +44,20 @@ html, body {
   height: 100%;
 }
 
-.navbar-nav {
-  overflow: hidden;
-  height: 70px;
-  align-items: flex-end; /* aligns navigation links to bottom */
-}
-
 /* Increase the navbar logo size */
 .navbar-brand img {
     max-height: 50px; /* Increase the max width as needed */
     width: auto;     /* Maintain aspect ratio */
     vertical-align: middle;
 }
 
+/* General settings for navbar */
+.navbar-nav {
+  overflow: hidden;
+  height: 70px;
+  align-items: flex-end; /* aligns navigation links to bottom */
+}
+
 /* Change the text color of the navbar tabs */
 .navbar-nav .nav-link {
     color: var(--ltgrey);
@@ -69,7 +69,7 @@ html, body {
   color: var(--dkgrey);
 }
 
-/* Change color of all links */
+/* Change default links color */
 a {
     color: var(--orange);
 }
@@ -82,4 +82,4 @@ a:hover {
 /* Change color of links when clicked (visited) */
 a:visited {
     color: var(--gold);
-}
+}
diff --git a/altdoc/quarto_website.yml b/altdoc/quarto_website.yml
@@ -9,6 +9,12 @@ website:
     left:
       - text: Home
         file: index.qmd
+      - text: About
+        file: about.qmd
+      - text: Contact
+        file: contact.qmd
+      - text: News
+        file: $ALTDOC_NEWS
       - text: License
         file: $ALTDOC_LICENSE
     right:

diff --git a/docs/CITATION.html b/docs/CITATION.html
@@ -91,6 +91,18 @@
   <li class="nav-item">
     <a class="nav-link" href="./index.html"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./about.html"> 
+<span class="menu-text">About</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./contact.html"> 
+<span class="menu-text">Contact</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./NEWS.html"> 
+<span class="menu-text">News</span></a>
   </li>  
   <li class="nav-item">
     <a class="nav-link" href="./LICENSE.html"> 
@@ -137,16 +149,18 @@ <h1>Citation</h1>
 <pre class="verbatim"><code>To cite package ‘handwriterApp’ in publications use:
 
   Iowa State University of Science and Technology on behalf of its Center for
-  Statistics and Applications in Forensic Evidence, Reinders S (????).
+  Statistics and Applications in Forensic Evidence, Reinders S (2024).
   _handwriterApp: Shiny App for Handwriting Analysis in R_. R package version
-  1.0.0, &lt;https://github.com/CSAFE-ISU/handwriterApp&gt;.
+  1.0.0, commit bf9918f390d1ca23532e201f88e624564d1be8ec,
+  &lt;https://github.com/CSAFE-ISU/handwriterApp&gt;.
 
 A BibTeX entry for LaTeX users is
 
   @Manual{,
     title = {handwriterApp: Shiny App for Handwriting Analysis in R},
     author = {{Iowa State University of Science and Technology on behalf of its Center for Statistics and Applications in Forensic Evidence} and Stephanie Reinders},
-    note = {R package version 1.0.0},
+    year = {2024},
+    note = {R package version 1.0.0, commit bf9918f390d1ca23532e201f88e624564d1be8ec},
     url = {https://github.com/CSAFE-ISU/handwriterApp},
   }</code></pre>
 

diff --git a/docs/CSAFE-Tools_Stacked_white_cropped.png b/docs/CSAFE-Tools_Stacked_white_cropped.png
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
@@ -91,6 +91,18 @@
   <li class="nav-item">
     <a class="nav-link" href="./index.html"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./about.html"> 
+<span class="menu-text">About</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./contact.html"> 
+<span class="menu-text">Contact</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./NEWS.html"> 
+<span class="menu-text">News</span></a>
   </li>  
   <li class="nav-item">
     <a class="nav-link active" href="./LICENSE.html" aria-current="page"> 

diff --git a/docs/NEWS.html b/docs/NEWS.html
@@ -91,6 +91,18 @@
   <li class="nav-item">
     <a class="nav-link" href="./index.html"> 
 <span class="menu-text">Home</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./about.html"> 
+<span class="menu-text">About</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./contact.html"> 
+<span class="menu-text">Contact</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link active" href="./NEWS.html" aria-current="page"> 
+<span class="menu-text">News</span></a>
   </li>  
   <li class="nav-item">
     <a class="nav-link" href="./LICENSE.html">