Handling of interruptions #78
Workflow file for this run
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| name: crpropa-example-test | |
| on: [push, pull_request] | |
| jobs: | |
| linux: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: "ubuntu-22" | |
| os: ubuntu-22.04 | |
| cxx: "g++-11" | |
| cc: "gcc-11" | |
| fc: "gfortran-11" | |
| swig_builtin: "On" #uses swig 4.0.2 | |
| py: "/usr/bin/python3" #python 3.10 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Preinstall | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libmuparser-dev python3 python3-dev python3-setuptools python-setuptools libhdf5-serial-dev libomp5 libomp-dev libfftw3-dev libcfitsio-dev lcov | |
| pip3 install -r doc/pages/example_notebooks/requirements.txt # load requrements for notebooks | |
| pip3 install --upgrade Pygments | |
| - name: Set up the build | |
| env: | |
| CXX: ${{ matrix.config.cxx }} | |
| CC: ${{ matrix.config.cc }} | |
| FC: ${{ matrix.config.fc }} | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/.local -DENABLE_PYTHON=True -DPython_EXECUTABLE=${{ matrix.config.py }} -DENABLE_TESTING=Off -DENABLE_SWIG_BUILTIN=${{ matrix.config.swig_builtin }} -DSIMD_EXTENSIONS=native -DPython_INSTALL_PACKAGE_DIR=/home/runner/.local/ | |
| - name: Build CRPropa | |
| run: | | |
| cd build | |
| make install -j | |
| - name: convert notebooks to python | |
| env: | |
| PYTHONPATH: "/home/runner/.local" | |
| runfolder: "/home/runner/notebook_run" | |
| run: | | |
| mkdir "$runfolder" | |
| cd doc/pages/example_notebooks/ | |
| for file in */*.ipynb; do | |
| echo "$file" | |
| if [ -f "$file" ]; then | |
| f=(${file//// }) | |
| f=${f[1]} | |
| f=(${f//./}) | |
| finalFile="$runfolder"/"$f".py | |
| echo "convert notebook $file to script $finalFile" | |
| jupyter nbconvert --to python "$file" --stdout | grep -v -e "^get_ipython" > "$runfolder"/"$f".py | |
| fi | |
| done | |
| - name: run all python scripts | |
| env: | |
| PYTHONPATH: "/home/runner/.local" | |
| runfolder: "/home/runner/notebook_run" | |
| run: | | |
| cp doc/pages/example_notebooks/galactic_lensing/crpropa_output.txt "$runfolder"/ | |
| cd "$runfolder" | |
| for file in *.py; do | |
| if [ "$file" = "custom-photon-fieldipynb.py" ] || | |
| [ "$file" = "MHD_modelsipynb.py" ] || | |
| [ "$file" = "density_grid_samplingipynb.py" ] || | |
| [ "$file" = "lensing_crv4ipynb.py" ] || | |
| [ "$file" = "interrupt_candidateVectoripynb.py" ] || | |
| [ "$file" = "interrupt_sourceipynb.py" ] || | |
| [ "$file" = "lensing_mapsv4ipynb.py" ]; then | |
| echo "skip file $file" | |
| else | |
| echo "run file $file" | |
| python3 $file | |
| fi | |
| done |