better citation info in docs (#187) #903
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Testing | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| - '!joss-paper' | |
| jobs: | |
| formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: psf/black@stable | |
| with: | |
| src: "./regional_mom6 ./tests" | |
| testing: | |
| needs: formatting | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/cosima/regional-test-env:updated | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| environment-file: environment-ci.yml | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install from source | |
| run: | | |
| python -m pip install . | |
| - name: Install pytest | |
| run: | | |
| python -m pip install pytest pytest-cov nbval | |
| - name: Test with pytest | |
| run: | | |
| if [[ "${{ matrix.python-version }}" == "3.10" ]]; then | |
| python -m pytest -v --doctest-modules --cov=regional_mom6 --cov-report=xml tests/ regional_mom6/ | |
| else | |
| python -m pytest -v --doctest-modules tests/ regional_mom6/ | |
| fi | |
| - name: Test the example notebook | |
| run: | | |
| ln -s /data demos/PATH_TO_GLORYS_DATA | |
| ln -s /data demos/PATH_TO_GEBCO_FILE | |
| ln -s /build/FRE-NCtools/tools demos/PATH_TO_FRE_TOOLS | |
| python -m pytest --nbval demos/reanalysis-forced.ipynb --nbval-current-env --cov=regional_mom6 --cov-report=xml tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| if: ${{ matrix.python-version == '3.10' }} | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: ./coverage/reports/ | |
| env_vars: OS,PYTHON | |
| files: ./coverage.xml | |
| name: codecov-umbrella |