You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Adds the new group command to group PCR duplicates and return the groups in a tagged BAM file and/or flat file format. This was motivated by multiple requests to group PCR duplicated reads for downstream processes, e,g #45, #54. Special thanks to Nils Koelling (@koelling) for testing the group command.
Adds the --umi-separator option for dedup and group for workflow where umi_tools extract is not used to extract the UMI. This was motivated by #58