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0.3.0

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@TomSmithCGAT TomSmithCGAT released this 01 Dec 18:20
· 712 commits to master since this release
  • Adds the new group command to group PCR duplicates and return the groups in a tagged BAM file and/or flat file format. This was motivated by multiple requests to group PCR duplicated reads for downstream processes, e,g #45, #54. Special thanks to Nils Koelling (@koelling) for testing the group command.
  • Adds the --umi-separator option for dedup and group for workflow where umi_tools extract is not used to extract the UMI. This was motivated by #58