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QC step to exclude failed samples (based on CDC recommended FASTQ QC thresholds) from analysis.
#125
opened Nov 7, 2024 by
jessres
FAQCs repeatedly failing with Exit Code 1 - causing pipeline to fail
#115
opened Mar 7, 2024 by
snallani-msdh
SnpEff config file is passed verbatim (not linked in work directory)
#102
opened Jun 27, 2023 by
DOH-JDJ0303
changes to the paths of custom scripts in local modules for cloud computing
#81
opened Aug 3, 2022 by
cjjossart
Create_Specific_Profiles_For_species_specific_qc_configs
enhancement
New feature or request
#56
opened May 6, 2022 by
sateeshperi
[feature request] consider checking for read-level contamination with Kraken2
enhancement
New feature or request
#52
opened Apr 28, 2022 by
kapsakcj
discuss optimum error handling strategy for the workflow processes
#16
opened Mar 8, 2022 by
sateeshperi
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Follow long discussions with comments:>50.