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Refactor for more multi dispatch #79

Merged
merged 21 commits into from
Feb 27, 2024
Merged

Refactor for more multi dispatch #79

merged 21 commits into from
Feb 27, 2024

Commits on Feb 26, 2024

  1. moved callable functions into generate_latent_infs methods

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  2. Functional rewrite of latent processes

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  3. functional patterns for observation model

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  4. Merge branch 'main' into refactor-for-more-multi-dispatch

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  5. Default method for generate latent process doesn't need to be generat… 

    …ed by @model
    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  6. Functional refactor for observation models

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  7. functional refactor for initialisation

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  8. temporary broken state

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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  9. Shift initialisation into epimodel

    @SamuelBrand1
    SamuelBrand1 committed Feb 26, 2024
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Commits on Feb 27, 2024

  1. Merge branch 'main' into refactor-for-more-multi-dispatch

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  2. Moved the function closure approach of generate_latent_infs for `Re… 

    …newal` to a callable on `Renewal`
    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  3. new unit tests for overall approach

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  4. remove undefined exports and fix broken unit test due to default prio… 

    …rs not being exported (used internally now)
    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  5. Delete accidental script commit

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  6. New model diagram

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  7. Update toy_model_log_infs_RW.jl

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  8. reformat and delete commented code

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  9. delete initialisation --- not used

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  10. reformat to latest version of SciMLStyle

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  11. Create safety for rt/Rt modelling so doesn't sample huge epidemics th… 

    …at lead to overflow errors
    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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  12. Update test_models.jl

    @SamuelBrand1
    SamuelBrand1 committed Feb 27, 2024
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