ci: create simple E2E test for github actions #13
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.7"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install most mimseq deps with conda | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: .github/environment.yml | |
| cache-environment: false | |
| cache-downloads: true | |
| generate-run-shell: true | |
| create-args: | | |
| python=${{ matrix.python-version }} | |
| - name: Install usearch | |
| run: | | |
| wget https://drive5.com/downloads/usearch10.0.240_i86linux32.gz | |
| gunzip usearch10.0.240_i86linux32.gz | |
| chmod +x usearch10.0.240_i86linux32 | |
| mv usearch10.0.240_i86linux32 /usr/local/bin/usearch | |
| shell: micromamba-shell {0} | |
| - name: Install mimseq | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| pip install . | |
| shell: micromamba-shell {0} | |
| - name: Test | |
| run: | | |
| pytest | |
| shell: micromamba-shell {0} | |
| - uses: actions/upload-artifact@v3 | |
| if: always() | |
| with: | |
| name: mimseq-output | |
| path: "test_*" | |
| build-status: # for branch protection rule | |
| runs-on: ubuntu-latest | |
| needs: [build] | |
| if: always() | |
| steps: | |
| - name: Successful build | |
| if: ${{ !(contains(needs.*.result, 'failure')) }} | |
| run: exit 0 | |
| - name: Failing build | |
| if: ${{ contains(needs.*.result, 'failure') }} | |
| run: exit 1 |