feat: create reneeDataSet class #16
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all analysis objects in a list for extensibility
it hasn't been updated in 4 years :'(
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Changes
Create reneeDataSet class with the S7 system.
reneeDataSet objects contain properties for the count matrix and sample metadata, plus a list of analysis objects such as for DESeq2, limma, etc.
run_deseq2()takes a reneeDataSet, constructs the DESeqDataSet, and runs DESeq2.Issues
partly resolves #3 -- going with a different design
PR Checklist
(
Strikethroughany points that are not applicable.)NEWS.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/devtools::check()locally and fix all notes, warnings, and errors.