fix: lofreq build from source

CCBR · Feb 7, 2024 · 6034f6e · 6034f6e
1 parent e5ec972
commit 6034f6e
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diff --git a/docker/logan_base/Dockerfile b/docker/logan_base/Dockerfile
@@ -203,6 +203,16 @@ RUN wget -O svaba_1.2.0 https://github.com/walaj/svaba/releases/download/v1.2.0/
 ENV PATH="/opt2/svaba:$PATH"
 
 # LOFREQ
+RUN git clone https://github.com/CSB5/lofreq \
+    && cd /opt2/lofreq \
+    && ./bootstrap \
+    && ./configure --prefix=/opt2/lofreq/ \
+    && make \
+    && make install 
+
+ENV PATH="/opt2/lofreq/bin:$PATH"
+
+
 RUN wget https://github.com/CSB5/lofreq/raw/master/dist/lofreq_star-2.1.5_linux-x86-64.tgz \
     && tar -xzf lofreq_star-2.1.5_linux-x86-64.tgz \ 
     && chmod a+x lofreq_star-2.1.5_linux-x86-64/bin/lofreq \

diff --git a/docker/logan_base/build.sh b/docker/logan_base/build.sh
@@ -4,7 +4,7 @@
 #docker buildx inspect upbeat_ganguly
 #docker buildx build --platform linux/amd64 -f Dockerfile -t dnousome/ccbr_logan_base:v0.3.0 -t dnousome/ccbr_logan_base:latest --push .
 
-docker build --platform linux/amd64 --tag ccbr_logan_base:v0.3.3 -f Dockerfile . 
+docker build --platform linux/amd64 --tag ccbr_logan_base:v0.3.4 -f Dockerfile . 
 
 docker tag ccbr_logan_base:v0.3.4 dnousome/ccbr_logan_base:v0.3.4
 docker tag ccbr_logan_base:v0.3.4 dnousome/ccbr_logan_base