fix: make sure mamba is in the path

CCBR · Oct 23, 2024 · f775adf · f775adf
1 parent 6111511
commit f775adf
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/common/ccbr_ubuntu_base_20.04/Dockerfile.v7 b/common/ccbr_ubuntu_base_20.04/Dockerfile.v7
@@ -87,6 +87,7 @@ RUN echo 'export PATH=/opt2/conda/bin:$PATH' > /etc/profile.d/conda.sh && \
     wget --quiet "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh" -O ~/miniforge3.sh && \
     /bin/bash ~/miniforge3.sh -b -p /opt2/conda && \
     rm ~/miniforge3.sh && chmod 777 -R /opt2/conda/
+ENV PATH="/opt2/conda/bin:$PATH"
 
 # R, python, and other packages available in conda should be installed with mamba here.
 # Specify all dependencies in environment.yml
@@ -98,7 +99,7 @@ ENV PATH="/opt2/conda/envs/${CONDA_ENV}/bin:$PATH"
 ENV PYTHONPATH=""
 
 # Fix python
-RUN ln -s /opt2/conda/bin/python /usr/bin/python \
+RUN ln -s /opt2/conda/bin/python3 /usr/bin/python \
 	&& ln -s /usr/bin/python2.7 /usr/bin/python2
 
 # cleanup etc