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chore: update CHANGELOG.md
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kelly-sovacool committed Nov 23, 2024
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## CHARLIE development version

### bug fixes

- CHARLIE was falsely throwing a file permissions error for tempdir values containing bash variables. (#118, @kelly-sovacool)
- Singularity bind paths were not being set properly. (#119, @kelly-sovacool)
- Update docker containers to set `$PYTHONPATH`. (#119, #125, @kelly-sovacool)
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- Fix `reconfig` to correctly replace variables in the config file. (#121, @kelly-sovacool)
- Prevent using excessive memory when copying reference files. (#126, @kelly-sovacool)
- Fix missing output files due to file system latency and use real (absolute) paths where possible. (#130, @kelly-sovacool)
- Update documentation to reflect biowulf usage and improved test dataset. (#132, @kelly-sovacool)

## CHARLIE 0.11.0

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