ci: attempt to install DCC 0.5.0 & python 3.5 via docker

CCBR · May 2, 2024 · 09f8bae · 09f8bae
1 parent fbdb664
commit 09f8bae
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Showing 2 changed files with 11 additions and 5 deletions.
diff --git a/docker/dcc/Dockerfile b/docker/dcc/Dockerfile
@@ -9,11 +9,11 @@ ARG REPONAME="000000"
 ENV REPONAME=${REPONAME}
 
 # install DCC
-ENV DCC_VERSION=0.5.0
-RUN wget https://github.com/dieterich-lab/DCC/archive/refs/tags/v${DCC_VERSION}.tar.gz -O dcc.tar.gz && \
-    tar -xzvf dcc.tar.gz && \
-    cd DCC-${DCC_VERSION} && \
-    python setup.py install
+COPY environment.yml /data2/
+ENV CONDA_ENV=dcc
+RUN mamba env create -n ${CONDA_ENV} -f /data2/environment.yml && \
+    echo "conda activate ${CONDA_ENV}" > ~/.bashrc
+ENV PATH="/opt2/conda/envs/${CONDA_ENV}/bin:$PATH"
 RUN which DCC && DCC -h
 
 # Save Dockerfile in the docker

diff --git a/docker/dcc/environment.yml b/docker/dcc/environment.yml
@@ -0,0 +1,6 @@
+channels:
+    - conda-forge
+    - bioconda
+dependencies:
+    - python=3.5
+    - bioconda::dcc=0.5.0