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fix: remove singularity version number #139

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Jul 16, 2024
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fix: remove singularity version number #139

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21 changes: 12 additions & 9 deletions CHANGELOG.md
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Expand Up @@ -6,15 +6,18 @@
- Ensures control replicate number is an integer.
- Fixes FDR cutoff misassigned to log2FC cutoff.
- Fixes `no_dedup` variable names in library normalization scripts.
- Containerize rules that require R (`deseq`, `go_enrichment`, and `spikein_assessment`) to fix installation issues with common R library path. (#129, @kelly-sovacool)
- The `Rlib_dir` and `Rpkg_config` config options have been removed as they are no longer needed.
- New visualizations: (#132, @epehrsson)
- New rules `cov_correlation`, `homer_enrich`, `combine_homer`, `count_peaks`
- Add peak caller to MACS2 peak xls filename
- New parameters in the config file to make certain rules optional: (#133, @kelly-sovacool)
- GO enrichment is controlled by `run_go_enrichment` (default: `false`)
- ROSE is controlled by `run_rose` (default: `false`)
- Fig bug that added nonexistent directories to the singularity bind paths. (#135, @kelly-sovacool)
- Fig bug that added nonexistent directories to the singularity bind paths. (#135, @kelly-sovacool)
- New features:
- Containerize rules that require R (`deseq`, `go_enrichment`, and `spikein_assessment`) to fix installation issues with common R library path. (#129, @kelly-sovacool)
- The `Rlib_dir` and `Rpkg_config` config options have been removed as they are no longer needed.
- New visualizations: (#132, @epehrsson)
- New rules `cov_correlation`, `homer_enrich`, `combine_homer`, `count_peaks`
- Add peak caller to MACS2 peak xls filename
- New parameters in the config file to make certain rules optional: (#133, @kelly-sovacool)
- GO enrichment is controlled by `run_go_enrichment` (default: `false`)
- ROSE is controlled by `run_rose` (default: `false`)
- Misc:
- The singularity version is no longer specified, per request of the biowulf admins. (#139, @kelly-sovacool)

## CARLISLE v2.5.0
- Refactors R packages to a common source location (#118, @slsevilla)
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2 changes: 1 addition & 1 deletion carlisle
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Expand Up @@ -11,7 +11,7 @@

PYTHON_VERSION="python/3.9"
SNAKEMAKE_VERSION="snakemake/7.19.1"
SINGULARITY_VERSION="singularity/3.10.5"
SINGULARITY_VERSION="singularity"

set -eo pipefail

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