Added Excel back to combine_homer output

CCBR · Jun 12, 2024 · f6f93e1 · f6f93e1
1 parent 48431e6
commit f6f93e1
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diff --git a/workflow/rules/annotations.smk b/workflow/rules/annotations.smk
@@ -103,7 +103,7 @@ rule combine_homer:
         rscript=join(SCRIPTSDIR,"_combine_macs2_homer.R")
     shell:
         """
-        Rscript {params.rscript} {input.peaks_file} {input.annotation} {output.combined}
+        Rscript {params.rscript} {input.peaks_file} {input.annotation} {output.combined_tsv} {output.combined_xlsx}
         """
 
 rule rose:

diff --git a/workflow/scripts/_combine_macs2_homer.R b/workflow/scripts/_combine_macs2_homer.R
@@ -1,5 +1,6 @@
 # Add peak statistics to HOMER annotations file
 
+library(openxlsx)
 library(readr)
 library(dplyr)
 library(tidyr)