Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
adding new pipelines ... updating dates
  • Loading branch information
kopardev authored Jul 19, 2024
1 parent b753669 commit 1cc7e65
Showing 1 changed file with 11 additions and 5 deletions.
16 changes: 11 additions & 5 deletions profile/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -75,11 +75,13 @@ Here is a list of our prominent pipelines and their release schedule on BIOWULF:
| WESSeq<sup>2</sup> | [XAVIER](https://github.com/CCBR/XAVIER)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | July 21th 2023 | Sep 1st 2023 |
| ATACSeq<sup>3</sup> | [ASPEN](https://github.com/CCBR/ASPEN)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | November 30th 2023 | TBD |
| ChIPSeq<sup>4</sup> | [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | October 15th 2023 | TBD |
| CRISPRSeq<sup>5</sup> | [CRUISE](https://github.com/CCBR/CRUISE)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | October 31st 2023 | TBD |
| CRISPRSeq<sup>5</sup> | [CRISPIN](https://github.com/CCBR/CRISPIN)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | September 31st 2023 | TBD |
| CUT&RunSeq<sup>6</sup> | [CARLISLE](https://github.com/CCBR/CARLISLE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | October 31st 2023 | TBD |
| circRNASeq<sup>7</sup> | [CHARLIE](https://github.com/CCBR/CHARLIE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | March 31st 2024 | TBD |
| scRNASeq<sup>8</sup> | [SINCLAIR](https://github.com/CCBR/SINCLAIR)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | April 30th 2024 | TBD |
| WGSSeq<sup>9</sup> | [LOGAN](https://github.com/CCBR/LOGAN)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | May 31st 2024 | TBD |
| EV-Seq<sup>10</sup> | [ESCAPE](https://github.com/CCBR/ESCAPE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | March 26th, 2024 | TBD |
| circRNASeq<sup>7</sup> | [CHARLIE](https://github.com/CCBR/CHARLIE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | _Jul 31st 2024_ | TBD |
| scRNASeq<sup>8</sup> | [SINCLAIR](https://github.com/CCBR/SINCLAIR)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | _Sep 30th 2024_ | TBD |
| WGSSeq<sup>9</sup> | [LOGAN](https://github.com/CCBR/LOGAN)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | _Sep 30th 2024_ | TBD |
| spatialSeq<sup>11</sup> | [SPENCER](https://github.com/CCBR/SPENCER)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | TBD | TBD |

<sup>* CLI = Command Line Interface </sup>
<sup>* GUI = Graphical User Interface </sup>
Expand All @@ -100,7 +102,11 @@ Here is a list of our prominent pipelines and their release schedule on BIOWULF:

<sup> **8** SINCLAIR=_SINgle CelL AnalysIs Resource_ addresses various single cell modalities... eg. single-cell expression, CITESeq, TCR-Seq, etc.</sup>

<sup> **9** WGSSeq pipeline will soon be CCBR's newest offering.</sup>
<sup> **9** LOGAN=_whoLe genOme-sequencinG Analysis pipeliNe_ will soon be CCBR's newest offering.</sup>

<sup> **10** ESCAPE=_Extracellular veSiCles rnAseq PipelinE_.</sup>

<sup> **11** SPENCER=_SPatial seqeENCing Resource_.</sup>

For any other datatype or pipeline, please [email :mailbox:](mailto:[email protected]) us directly to get the conversation started!

Expand Down

0 comments on commit 1cc7e65

Please sign in to comment.