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Chore(deps): Update tifffile requirement from <=2024.12.12 to <=2025.…
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…1.10 (#351)

Updates the requirements on
[tifffile](https://github.com/cgohlke/tifffile) to permit the latest
version.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/cgohlke/tifffile/releases">tifffile's
releases</a>.</em></p>
<blockquote>
<h2>v2025.1.10</h2>
<h2>Read and write TIFF files</h2>
<p>Tifffile is a Python library to</p>
<ol>
<li>store NumPy arrays in TIFF (Tagged Image File Format) files,
and</li>
<li>read image and metadata from TIFF-like files used in
bioimaging.</li>
</ol>
<p>Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF,
Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM,
ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage,
Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS,
Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI,
Argos AVS, and Philips DP formatted files.</p>
<p>Image data can be read as NumPy arrays or Zarr arrays/groups from
strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal
levels.</p>
<p>Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ
hyperstack compatible files in multi-page, volumetric, pyramidal,
memory-mappable, tiled, predicted, or compressed form.</p>
<p>Many compression and predictor schemes are supported via the
imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA,
LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL,
WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal
differencing.</p>
<p>Tifffile can also be used to inspect TIFF structures, read image data
from multi-dimensional file sequences, write fsspec ReferenceFileSystem
for TIFF files and image file sequences, patch TIFF tag values, and
parse many proprietary metadata formats.</p>
<h2>Changes</h2>
<ul>
<li>Improve type hints.</li>
<li>Deprecate Python 3.10.</li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/cgohlke/tifffile/blob/master/CHANGES.rst">tifffile's
changelog</a>.</em></p>
<blockquote>
<p>2025.1.10</p>
<ul>
<li>Pass 5110 tests.</li>
<li>Improve type hints.</li>
<li>Deprecate Python 3.10.</li>
</ul>
<p>2024.12.12</p>
<ul>
<li>Read PlaneProperty from STK UIC1Tag (<a
href="https://redirect.github.com/cgohlke/tifffile/issues/280">#280</a>).</li>
<li>Allow 'None' as alias for COMPRESSION.NONE and PREDICTOR.NONE (<a
href="https://redirect.github.com/cgohlke/tifffile/issues/274">#274</a>).</li>
<li>Zarr 3 is not supported (<a
href="https://redirect.github.com/cgohlke/tifffile/issues/272">#272</a>).</li>
</ul>
<p>2024.9.20</p>
<ul>
<li>Fix writing colormap to ImageJ files (breaking).</li>
<li>Improve typing.</li>
<li>Drop support for Python 3.9.</li>
</ul>
<p>2024.8.30</p>
<ul>
<li>Support writing OME Dataset and some StructuredAnnotations
elements.</li>
</ul>
<p>2024.8.28</p>
<ul>
<li>Fix LSM scan types and dimension orders (<a
href="https://redirect.github.com/cgohlke/tifffile/issues/269">#269</a>,
breaking).</li>
<li>Use IO[bytes] instead of BinaryIO for typing (<a
href="https://redirect.github.com/cgohlke/tifffile/issues/268">#268</a>).</li>
</ul>
<p>2024.8.24</p>
<ul>
<li>Do not remove trailing length-1 dimension writing non-shaped file
(breaking).</li>
<li>Fix writing OME-TIFF with certain modulo axes orders.</li>
<li>Make imshow NaN aware.</li>
</ul>
<p>2024.8.10</p>
<ul>
<li>Relax bitspersample check for JPEG, JPEG2K, and JPEGXL compression
(<a
href="https://redirect.github.com/cgohlke/tifffile/issues/265">#265</a>).</li>
</ul>
<p>2024.7.24</p>
<ul>
<li>Fix reading contiguous multi-page series via Zarr store (<a
href="https://redirect.github.com/cgohlke/tifffile/issues/67">#67</a>).</li>
</ul>
<p>2024.7.21</p>
<ul>
<li>Fix integer overflow in product function caused by numpy types.</li>
<li>Allow tag reader functions to fail.</li>
</ul>
<p>2024.7.2</p>
<ul>
<li>Enable memmap to create empty files with non-native byte order.</li>
<li>Deprecate Python 3.9, support Python 3.13.</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/cgohlke/tifffile/commit/016c474c3a28ae08968ffa9e24efcbf0dbdda8b1"><code>016c474</code></a>
Release v2025.1.10</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/54044d05cc519b0c2df2bd877c6300cb6bc7b3c0"><code>54044d0</code></a>
Update CHANGES.rst</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/2e08bddd29efcc2991d0f643c79174abfca6f92e"><code>2e08bdd</code></a>
Update LICENSE</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/d08d544a00db7fe0dfc79208f17efe05a44e0297"><code>d08d544</code></a>
Update tifffile/tifffile.py</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/eeda54aabc03c90b4cab55ade0f304fc214258a0"><code>eeda54a</code></a>
Update examples/earthbigdata.py</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/990d8f3387b5590205d8d289766ece7ac23ab789"><code>990d8f3</code></a>
Update tests/test_tifffile.py</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/e9ac4f8c893e8b17045ce8672e760c26bc8e127a"><code>e9ac4f8</code></a>
Update setup.py</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/ccd06ad4e4689844e408fbcc88a47d0592cd0da4"><code>ccd06ad</code></a>
Update docs/conf.py</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/b2198fa9555315ee6809436359fbae4e51f6e0b5"><code>b2198fa</code></a>
Update tifffile/numcodecs.py</li>
<li><a
href="https://github.com/cgohlke/tifffile/commit/00b42ea8226018ffee11eb8888511060ac7529d9"><code>00b42ea</code></a>
Release v2024.12.12</li>
<li>Additional commits viewable in <a
href="https://github.com/cgohlke/tifffile/compare/v2018.10.18...v2025.1.10">compare
view</a></li>
</ul>
</details>
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dependabot[bot] authored Jan 13, 2025
1 parent 3a2286e commit ec1ff2a
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ dependencies = [
'torch>=2.0,<=2.5.1',
'torchvision<=0.20.1',
'bioimageio.core==0.7',
'tifffile<=2024.12.12',
'tifffile<=2025.1.10',
'psutil<=6.1.1',
'pydantic>=2.5,<2.11',
'pytorch_lightning>=2.2,<=2.5.0.post0',
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