Skip to content

install/update supabase conda env #26

install/update supabase conda env

install/update supabase conda env #26

Workflow file for this run

name: Build & Test
on:
pull_request:
types: [opened, edited, synchronize, reopened]
branches: [main, develop]
push:
branches: [main, develop]
jobs:
deploy:
if: github.event_name == 'push' && (github.ref == 'refs/heads/develop' || github.ref == 'refs/heads/main')
runs-on: ubuntu-latest
env:
SSH_ADDRESS: ${{ github.ref == 'refs/heads/main' && secrets.SSH_ADDRESS_PROD || secrets.SSH_ADDRESS }}
SSH_USER: ${{ github.ref == 'refs/heads/main' && secrets.SSH_USER_PROD || secrets.SSH_USER }}
SSH_KEY: ${{ github.ref == 'refs/heads/main' && secrets.SSH_KEY_PROD || secrets.SSH_KEY }}
DEPLOY_ENVIRONMENT: ${{ github.ref == 'refs/heads/main' && 'PRODUCTION' || 'STAGING' }}
steps:
- name: Checkout code
uses: actions/checkout@v4
- name: Add SSH key
run: |
mkdir -p ~/.ssh
echo "${{ env.SSH_KEY }}" > ~/.ssh/id_rsa
chmod 700 ~/.ssh/id_rsa
- name: Deploy to server
run: |
echo "Attempting to deploy to $DEPLOY_ENVIRONMENT environment"
echo "Copying files to server located at $SSH_ADDRESS"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "mkdir -p /home/${{ env.SSH_USER }}/t-rex-monitor"
scp -v -o StrictHostKeyChecking=no -r ./* ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }}:/home/${{ env.SSH_USER }}/t-rex-monitor
echo "Finished deploying to $DEPLOY_ENVIRONMENT environment"
- name: Move service files
run: |
echo "Moving Grafana service and config files to correct path"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/alertmanager.yml /etc/alertmanager/alertmanager.yml"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/ben-error-rule.yml /etc/prometheus/ben-error-rule.yml"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/loki-local-config.yml /etc/loki-local-config.yml"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/loki.service /etc/systemd/system/loki.service"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/node_exporter.service /etc/systemd/system/node_exporter.service"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/overview.json /var/lib/grafana/dashboards/overview.json"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/prometheus.service /etc/systemd/system/prometheus.service"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/prometheus.yml /etc/prometheus"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/promtail-local-config.yml /etc/promtail-local-config.yml"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/promtail.service /etc/systemd/system/promtail.service"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/grafana/main/pushgateway.service /etc/systemd/system/pushgateway.service"
echo "Moving Ben scheduler service and config files to correct path"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/scheduler/jobs/ben-jobs.service /etc/systemd/system/ben-jobs.service"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/scheduler/jobs/ben-jobs.timer /etc/systemd/system/ben-jobs.timer"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/scheduler/supabase/ben-supabase.service /etc/systemd/system/ben-supabase.service"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/scheduler/supabase/ben-supabase.timer /etc/systemd/system/ben-supabase.timer"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/scheduler/logs/ben-logs.service /etc/systemd/system/ben-logs.service"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/scheduler/logs/ben-logs.timer /etc/systemd/system/ben-logs.timer"
echo "Finished moving service and config files."
- name: Restart services
run : |
echo "Restarting Grafana and scheduler services"
echo "Restarting Grafana services"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo systemctl daemon-reload; sudo systemctl restart prometheus.service; sudo systemctl restart node_exporter.service; sudo systemctl restart pushgateway.service; sudo systemctl restart alertmanager.service; sudo systemctl restart loki.service; sudo systemctl restart promtail.service; sudo systemctl restart grafana-server.service;"
echo "Restarting Ben scheduler services"
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "sudo systemctl daemon-reload; sudo systemctl restart ben-logs.service; sudo systemctl restart ben-logs.timer; sudo systemctl restart ben-supabase.service; sudo systemctl restart ben-supabase.timer; sudo systemctl restart ben-jobs.service; sudo systemctl restart ben-jobs.timer;"
echo "Finished restarting services"
- name: Move and Restart Ben Server Services
run : |
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} '
if [ -f "/etc/systemd/system/ben-ecopcr-server.service" ]; then
echo "Ben server service files already moved. Skipping setup step."
else
sudo mv /home/${{ env.SSH_USER }}/t-rex-monitor/scheduler/servers/*.service /etc/systemd/system/
sudo systemctl daemon-reload
for service_file in /etc/systemd/system/ben-*-server.service; do
if [ -e "$service_file" ]; then
sudo systemctl enable "$(basename "$service_file")"
sudo systemctl start "$(basename "$service_file")"
fi
done
fi
'
- name: Install Miniconda (if not already installed)
run: |
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "
if [ ! -d \"/home/${{ env.SSH_USER }}/miniconda\" ]; then \
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; \
bash miniconda.sh -b -p /home/${{ env.SSH_USER }}/miniconda; \
echo 'export PATH=/home/${{ env.SSH_USER }}/miniconda/bin:\$PATH' >> /home/${{ env.SSH_USER }}/.bashrc; \
fi"
- name: Create or update Conda environment
run: |
ssh -o StrictHostKeyChecking=no ${{ env.SSH_USER }}@${{ env.SSH_ADDRESS }} "export PATH=/home/${{ env.SSH_USER }}/miniconda/bin:\$PATH; conda env list | grep -q '^supabase' || conda env create -n supabase -f /home/${{ env.SSH_USER }}/t-rex-flask/scheduler/supabase/env.yml || conda env update -n supabase -f /home/${{ env.SSH_USER }}/t-rex-flask/scheduler/supabase/env.yml"
- name: Clean up SSH key
run: |
rm -f ~/.ssh/id_rsa