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BRAIN CoGS

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  1. HPC_manifolds HPC_manifolds Public

    Analysis of hippocampal activity in the towers task

    MATLAB 18 5

  2. Microscope Microscope Public

    Design and documentation for the 2p microscope.

    PostScript 10 1

  3. brain_atlas_toolkit brain_atlas_toolkit Public

    A set of python tools for navigating, viewing and manipulating hierarchical brain atlases

    Python 5

  4. precomputed precomputed Public

    Slurm/python scripts for converting light sheet data to precomputed format for Neuroglancer visualization

    Python 3 1

  5. BrainPipe BrainPipe Public

    Forked from PrincetonUniversity/BrainPipe

    Jupyter Notebook 3 1

  6. laserGalvoControl laserGalvoControl Public

    Matlab-based software to control scanning-laser setups for optogenetic experiments. Written by Lucas Pinto, [email protected]

    MATLAB 2 2

Repositories

Showing 10 of 36 repositories
  • U19-pipeline-python Public

    The python data pipeline defined with DataJoint for U19 projects

    BrainCOGS/U19-pipeline-python’s past year of commit activity
    Jupyter Notebook 1 14 2 1 Updated Jan 18, 2025
  • element-calcium-imaging Public Forked from datajoint/element-calcium-imaging

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p

    BrainCOGS/element-calcium-imaging’s past year of commit activity
    Jupyter Notebook 0 MIT 43 0 0 Updated Jan 18, 2025
  • BrainCOGS/VRrigs-documentation’s past year of commit activity
    JavaScript 0 1 0 0 Updated Jan 17, 2025
  • BrainCOGS/U19-Data-Viewer’s past year of commit activity
    Python 0 4 0 0 Updated Jan 14, 2025
  • U19-pipeline-matlab Public

    Data pipeline for U19 projects

    BrainCOGS/U19-pipeline-matlab’s past year of commit activity
    MATLAB 0 10 6 0 Updated Jan 14, 2025
  • Microscope Public

    Design and documentation for the 2p microscope.

    BrainCOGS/Microscope’s past year of commit activity
    PostScript 10 CC-BY-4.0 1 0 0 Updated Jan 10, 2025
  • BrainCOGS/braincogs.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 2, 2025
  • RecordingProcessJobGUI Public

    GUI to register recordings in the automatic pipeline

    BrainCOGS/RecordingProcessJobGUI’s past year of commit activity
    Python 0 GPL-3.0 2 0 1 Updated Dec 10, 2024
  • BrainCogsEphysSorters Public

    Compilation of electrophysiology sorters supported in the U19 Ephys Pipeline

    BrainCOGS/BrainCogsEphysSorters’s past year of commit activity
    MATLAB 0 GPL-3.0 2 0 0 Updated Oct 10, 2024
  • element-array-ephys Public Forked from datajoint/element-array-ephys

    DataJoint Element for Neuropixels analysis with Kilosort

    BrainCOGS/element-array-ephys’s past year of commit activity
    Python 0 MIT 35 0 0 Updated Oct 3, 2024