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TCGAbiolinksGUI crashes immediately upon opening in browser #61

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NotAPoetButACriminal opened this issue Jan 26, 2023 · 0 comments
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The RStudio session shows the following code:

TCGAbiolinksGUI()
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('file-text-o') does not correspond to a known icon
The name provided ('floppy-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('file-pdf-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
The name provided ('floppy-o') does not correspond to a known icon
The name provided ('picture-o') does not correspond to a known icon
Warning: Error in if: the condition has length > 1
49: survivalplotdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#28]
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#72]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
49: survivalplotdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#28]
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#84]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
49: survivalplotdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#28]
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#99]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/volcano.R#97]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
65: reactive:volcanodata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/volcano.R#58]
49: volcanodata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/volcano.R#107]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
66: reactive:heatmapdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#158]
50: heatmapdata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#98]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#108]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
51:
50: stop
49: heatmapdata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#118]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
51:
50: stop
49: heatmapdata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#124]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
52:
51: stop
50: dmrdata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/dmr.R#36]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
66: reactive:meandata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/meanMet.R#147]
50: meandata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/meanMet.R#26]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
52:
51: stop
50: meandata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/meanMet.R#36]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
50: deadata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/dea.R#163]
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/dea.R#197]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in h: error in evaluating the argument 'x' in selecting a method for function 'unique': the condition has length > 1
67: reactive:mut.oncoprint [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#128]
51: mut.oncoprint
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#86]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in h: error in evaluating the argument 'x' in selecting a method for function 'colnames': the condition has length > 1
67: reactive:annotation.maf [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#110]
51: annotation.maf
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#90]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
65: reactive:maedata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#344]
49: maedata
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#192]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
65: reactive:elmer.results.data [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#331]
49: elmer.results.data
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#357]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
52:
51: stop
50: elmer.results.data
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#384]
47:
4: shiny::runApp
1: TCGAbiolinksGUI
Warning: Error in if: the condition has length > 1
52:
51: stop
50: elmer.results.data
48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#406]
47:
4: shiny::runApp
1: TCGAbiolinksGUI

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