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Error in GDCprepare: Allele-specific Copy Number Segment - samples duplicated #636

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sigven opened this issue Sep 17, 2024 · 0 comments

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@sigven
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sigven commented Sep 17, 2024

Hi,
Thanks for a very useful package. Great work:) I have just tried (using v2.32.0) to download the allele-specific copy number segments from TCGA, as exemplified in the code examples provided here.

However, testing this returns the following error (also for other cohorts, not only TCGA-ACC):

Error in GDCprepare(query) : 
  There are samples duplicated. We will not be able to prepare it

Would be great to be able to get this function to work properly ;)

kind regards,
Sigve

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