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Update README.md
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asylvz authored Aug 24, 2023
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Expand Up @@ -160,7 +160,6 @@ All parameters
--rp [int] : Minimum number of supporting read pairs in initial clustering (Default is 5).
--mei [string ] : List of mobile element names separated by colon (Default is ["Alu:L1:SVA"])
--no-soft-clip : Skip soft clip remapping.
--no-interdup : Skip interspersed duplication clustering.
--no-mei : Skip mobile element insertion (MEI) clustering.
--resolved : Output sequence resolved vcf calls.
--first-chr [int] : Start running from a specific chromosome [0-based index in reference file]
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