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Update README.md
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asylvz authored Jan 13, 2020
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Expand Up @@ -30,9 +30,11 @@ htslib also requires:
* Ubuntu example:
sudo apt-get install liblzma-dev

Note that your BAM/CRAM files should be PCR free, otherwise you might get inaccurate results. Please eliminate PCR duplicates before running TARDIS with either Sambamba (https://lomereiter.github.io/sambamba/) or Picard (https://broadinstitute.github.io/picard/).

Optional dependencies
=====================
* gnuplot http://www.gnuplot.info) - for plotting fragment size distributions.
* gnuplot (http://www.gnuplot.info) - for plotting fragment size distributions.

Fetching TARDIS
===============
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