v1.2.3

output file name fix

v1.2.2

mrcanavar-auto outfile fix for cloud environments

v1.2.1

• mrcanavar can now load SAM from stdin
• mrcanavar-auto now supports BAM/CRAM input
• mrcanavar-auto now supports bypassing SAM generation if the input is a single file, by piping mrsFAST output to mrcanavar.

version 1.1.3

• A corner case bug is fixed.

version 1.1.2

• Memory leak in gene copy number calculation is fixed.

version 1.1.1

• Dry run and "cloud mode" added to mrcanavar-auto.

version 1.1

• mrcanavar-auto added for automated mapping & calling. Assumes that some files are available in the working directory. Use it with caution

version 1.0

• SAM files can now be given as a comma-separated list.