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Fig4k vis spec
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dilpath committed Oct 22, 2024
1 parent 6d3d7f5 commit 9c48b93
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Showing 3 changed files with 127 additions and 123 deletions.
Original file line number Diff line number Diff line change
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observableId simulationConditionId measurement time noiseParameters replicateId
Sphinga_obs wild_type 0.000806 0 sd_Sphinga_obs R1
Sphinga_obs wild_type 0.000618 0 sd_Sphinga_obs R2
Sphinga_obs wild_type 0.000675 0 sd_Sphinga_obs R3
Sphinga_obs wild_type 0.000828 0 sd_Sphinga_obs R4
Sphinga_obs wild_type 0.000176620209326007 2 sd_Sphinga_obs R1
Sphinga_obs wild_type 0.000144832895774474 2 sd_Sphinga_obs R2
Sphinga_obs wild_type 0.000137134901470714 2 sd_Sphinga_obs R3
Sphinga_obs wild_type 0.000181912527619117 2 sd_Sphinga_obs R4
Cer_obs wild_type 1.02701422984826000 0 sd_Cer_obs R1
Cer_obs wild_type 0.88628874050445800 0 sd_Cer_obs R2
Cer_obs wild_type 0.94577625665744500 0 sd_Cer_obs R3
Cer_obs wild_type 1.09426905460355000 0 sd_Cer_obs R4
Cer_obs wild_type 0.61224453862955600 2 sd_Cer_obs R1
Cer_obs wild_type 0.66579067622556900 2 sd_Cer_obs R2
Cer_obs wild_type 0.71263462907337200 2 sd_Cer_obs R3
Cer_obs wild_type 0.64198115909988600 2 sd_Cer_obs R4
Sphingo_obs wild_type 0.000384239736109822 0 sd_Sphingo_obs R1
Sphingo_obs wild_type 0.000391938220558207 0 sd_Sphingo_obs R2
Sphingo_obs wild_type 0.000371485514201383 0 sd_Sphingo_obs R3
Sphingo_obs wild_type 0.000431025477692304 0 sd_Sphingo_obs R4
Sphingo_obs wild_type 0.000334877541530201 2 sd_Sphingo_obs R1
Sphingo_obs wild_type 0.000231658738329562 2 sd_Sphingo_obs R2
Sphingo_obs wild_type 0.000203229934963182 2 sd_Sphingo_obs R3
Sphingo_obs wild_type 0.000227793942150799 2 sd_Sphingo_obs R4
S1P_obs wild_type 1.421 0 sd_S1P_obs R1
S1P_obs wild_type 1.682 0 sd_S1P_obs R2
S1P_obs wild_type 1.614 0 sd_S1P_obs R3
S1P_obs wild_type 1.498 0 sd_S1P_obs R4
S1P_obs wild_type 1.541 0 sd_S1P_obs R5
Sphinga_obs mutant 0.000818 0 sd_Sphinga_obs R1
Sphinga_obs mutant 0.000761 0 sd_Sphinga_obs R2
Sphinga_obs mutant 0.000766 0 sd_Sphinga_obs R3
Sphinga_obs mutant 0.000835 0 sd_Sphinga_obs R4
Sphinga_obs mutant 0.000243420646439453 2 sd_Sphinga_obs R1
Sphinga_obs mutant 0.000239502545840865 2 sd_Sphinga_obs R2
Sphinga_obs mutant 0.000234873603648106 2 sd_Sphinga_obs R3
Sphinga_obs mutant 0.000233253355552097 2 sd_Sphinga_obs R4
Cer_obs mutant 0.89279118366547800 0 sd_Cer_obs R1
Cer_obs mutant 0.67780496378448300 0 sd_Cer_obs R2
Cer_obs mutant 0.85764949213544200 0 sd_Cer_obs R3
Cer_obs mutant 0.85781658904367100 0 sd_Cer_obs R4
Cer_obs mutant 0.87778518228732400 2 sd_Cer_obs R1
Cer_obs mutant 1.02057671816819000 2 sd_Cer_obs R2
Cer_obs mutant 0.96666151369505000 2 sd_Cer_obs R3
Cer_obs mutant 0.82729287460103200 2 sd_Cer_obs R4
Sphingo_obs mutant 0.000417035014112306 0 sd_Sphingo_obs R1
Sphingo_obs mutant 0.000366195755858261 0 sd_Sphingo_obs R2
Sphingo_obs mutant 0.000329161089157800 0 sd_Sphingo_obs R3
Sphingo_obs mutant 0.000341631934155604 0 sd_Sphingo_obs R4
Sphingo_obs mutant 0.000323262438726203 2 sd_Sphingo_obs R1
Sphingo_obs mutant 0.000316663676062039 2 sd_Sphingo_obs R2
Sphingo_obs mutant 0.000279704837681421 2 sd_Sphingo_obs E3
Sphingo_obs mutant 0.000242795904444989 2 sd_Sphingo_obs E4
S1P_obs mutant 2.128 0 sd_S1P_obs R1
S1P_obs mutant 2.143 0 sd_S1P_obs R2
S1P_obs mutant 1.565 0 sd_S1P_obs R3
S1P_obs mutant 2.275 0 sd_S1P_obs R4
S1P_obs mutant 2.238 0 sd_S1P_obs R5
observableId simulationConditionId measurement time noiseParameters replicateId datasetId
Sphinga_obs wild_type 0.000806 0 sd_Sphinga_obs R1 wt_day2
Sphinga_obs wild_type 0.000618 0 sd_Sphinga_obs R2 wt_day2
Sphinga_obs wild_type 0.000675 0 sd_Sphinga_obs R3 wt_day2
Sphinga_obs wild_type 0.000828 0 sd_Sphinga_obs R4 wt_day2
Sphinga_obs wild_type 0.000176620209326007 2 sd_Sphinga_obs R1 wt_day4
Sphinga_obs wild_type 0.000144832895774474 2 sd_Sphinga_obs R2 wt_day4
Sphinga_obs wild_type 0.000137134901470714 2 sd_Sphinga_obs R3 wt_day4
Sphinga_obs wild_type 0.000181912527619117 2 sd_Sphinga_obs R4 wt_day4
Cer_obs wild_type 1.02701422984826 0 sd_Cer_obs R1 wt_day2
Cer_obs wild_type 0.886288740504458 0 sd_Cer_obs R2 wt_day2
Cer_obs wild_type 0.945776256657445 0 sd_Cer_obs R3 wt_day2
Cer_obs wild_type 1.09426905460355 0 sd_Cer_obs R4 wt_day2
Cer_obs wild_type 0.612244538629556 2 sd_Cer_obs R1 wt_day4
Cer_obs wild_type 0.665790676225569 2 sd_Cer_obs R2 wt_day4
Cer_obs wild_type 0.712634629073372 2 sd_Cer_obs R3 wt_day4
Cer_obs wild_type 0.641981159099886 2 sd_Cer_obs R4 wt_day4
Sphingo_obs wild_type 0.000384239736109822 0 sd_Sphingo_obs R1 wt_day2
Sphingo_obs wild_type 0.000391938220558207 0 sd_Sphingo_obs R2 wt_day2
Sphingo_obs wild_type 0.000371485514201383 0 sd_Sphingo_obs R3 wt_day2
Sphingo_obs wild_type 0.000431025477692304 0 sd_Sphingo_obs R4 wt_day2
Sphingo_obs wild_type 0.000334877541530201 2 sd_Sphingo_obs R1 wt_day4
Sphingo_obs wild_type 0.000231658738329562 2 sd_Sphingo_obs R2 wt_day4
Sphingo_obs wild_type 0.000203229934963182 2 sd_Sphingo_obs R3 wt_day4
Sphingo_obs wild_type 0.000227793942150799 2 sd_Sphingo_obs R4 wt_day4
S1P_obs wild_type 1.421 0 sd_S1P_obs R1 wt_day2
S1P_obs wild_type 1.682 0 sd_S1P_obs R2 wt_day2
S1P_obs wild_type 1.614 0 sd_S1P_obs R3 wt_day2
S1P_obs wild_type 1.498 0 sd_S1P_obs R4 wt_day2
S1P_obs wild_type 1.541 0 sd_S1P_obs R5 wt_day2
Sphinga_obs mutant 0.000818 0 sd_Sphinga_obs R1 mut_day2
Sphinga_obs mutant 0.000761 0 sd_Sphinga_obs R2 mut_day2
Sphinga_obs mutant 0.000766 0 sd_Sphinga_obs R3 mut_day2
Sphinga_obs mutant 0.000835 0 sd_Sphinga_obs R4 mut_day2
Sphinga_obs mutant 0.000243420646439453 2 sd_Sphinga_obs R1 mut_day4
Sphinga_obs mutant 0.000239502545840865 2 sd_Sphinga_obs R2 mut_day4
Sphinga_obs mutant 0.000234873603648106 2 sd_Sphinga_obs R3 mut_day4
Sphinga_obs mutant 0.000233253355552097 2 sd_Sphinga_obs R4 mut_day4
Cer_obs mutant 0.892791183665478 0 sd_Cer_obs R1 mut_day2
Cer_obs mutant 0.677804963784483 0 sd_Cer_obs R2 mut_day2
Cer_obs mutant 0.857649492135442 0 sd_Cer_obs R3 mut_day2
Cer_obs mutant 0.857816589043671 0 sd_Cer_obs R4 mut_day2
Cer_obs mutant 0.877785182287324 2 sd_Cer_obs R1 mut_day4
Cer_obs mutant 1.02057671816819 2 sd_Cer_obs R2 mut_day4
Cer_obs mutant 0.96666151369505 2 sd_Cer_obs R3 mut_day4
Cer_obs mutant 0.827292874601032 2 sd_Cer_obs R4 mut_day4
Sphingo_obs mutant 0.000417035014112306 0 sd_Sphingo_obs R1 mut_day2
Sphingo_obs mutant 0.000366195755858261 0 sd_Sphingo_obs R2 mut_day2
Sphingo_obs mutant 0.0003291610891578 0 sd_Sphingo_obs R3 mut_day2
Sphingo_obs mutant 0.000341631934155604 0 sd_Sphingo_obs R4 mut_day2
Sphingo_obs mutant 0.000323262438726203 2 sd_Sphingo_obs R1 mut_day4
Sphingo_obs mutant 0.000316663676062039 2 sd_Sphingo_obs R2 mut_day4
Sphingo_obs mutant 0.000279704837681421 2 sd_Sphingo_obs E3 mut_day4
Sphingo_obs mutant 0.000242795904444989 2 sd_Sphingo_obs E4 mut_day4
S1P_obs mutant 2.128 0 sd_S1P_obs R1 mut_day2
S1P_obs mutant 2.143 0 sd_S1P_obs R2 mut_day2
S1P_obs mutant 1.565 0 sd_S1P_obs R3 mut_day2
S1P_obs mutant 2.275 0 sd_S1P_obs R4 mut_day2
S1P_obs mutant 2.238 0 sd_S1P_obs R5 mut_day2
Original file line number Diff line number Diff line change
@@ -1,59 +1,59 @@
observableId simulationConditionId simulation time noiseParameters replicateId
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R1
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R2
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R3
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R4
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R1
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R2
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R3
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R4
Cer_obs mutant 0.822 0 sd_Cer_obs R1
Cer_obs mutant 0.822 0 sd_Cer_obs R2
Cer_obs mutant 0.822 0 sd_Cer_obs R3
Cer_obs mutant 0.822 0 sd_Cer_obs R4
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R1
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R2
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R3
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R4
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R1
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R2
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R3
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R4
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs R1
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs R2
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs E3
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs E4
S1P_obs mutant 2.07 0 sd_S1P_obs R1
S1P_obs mutant 2.07 0 sd_S1P_obs R2
S1P_obs mutant 2.07 0 sd_S1P_obs R3
S1P_obs mutant 2.07 0 sd_S1P_obs R4
S1P_obs mutant 2.07 0 sd_S1P_obs R5
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R1
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R2
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R3
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R4
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R1
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R2
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R3
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R4
Cer_obs wild_type 0.988 0 sd_Cer_obs R1
Cer_obs wild_type 0.988 0 sd_Cer_obs R2
Cer_obs wild_type 0.988 0 sd_Cer_obs R3
Cer_obs wild_type 0.988 0 sd_Cer_obs R4
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R1
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R2
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R3
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R4
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R1
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R2
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R3
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R4
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R1
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R2
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R3
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R4
S1P_obs wild_type 1.551 0 sd_S1P_obs R1
S1P_obs wild_type 1.551 0 sd_S1P_obs R2
S1P_obs wild_type 1.551 0 sd_S1P_obs R3
S1P_obs wild_type 1.551 0 sd_S1P_obs R4
S1P_obs wild_type 1.551 0 sd_S1P_obs R5
observableId simulationConditionId simulation time noiseParameters replicateId datasetId
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R1 mut_day2
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R2 mut_day2
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R3 mut_day2
Sphinga_obs mutant 0.000795 0 sd_Sphinga_obs R4 mut_day2
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R1 mut_day4
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R2 mut_day4
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R3 mut_day4
Sphinga_obs mutant 0.00023808252146852583 2 sd_Sphinga_obs R4 mut_day4
Cer_obs mutant 0.822 0 sd_Cer_obs R1 mut_day2
Cer_obs mutant 0.822 0 sd_Cer_obs R2 mut_day2
Cer_obs mutant 0.822 0 sd_Cer_obs R3 mut_day2
Cer_obs mutant 0.822 0 sd_Cer_obs R4 mut_day2
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R1 mut_day4
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R2 mut_day4
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R3 mut_day4
Cer_obs mutant 0.8722233694707532 2 sd_Cer_obs R4 mut_day4
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R1 mut_day2
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R2 mut_day2
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R3 mut_day2
Sphingo_obs mutant 0.000364 0 sd_Sphingo_obs R4 mut_day2
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs R1 mut_day4
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs R2 mut_day4
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs E3 mut_day4
Sphingo_obs mutant 0.0003062581698170869 2 sd_Sphingo_obs E4 mut_day4
S1P_obs mutant 2.07 0 sd_S1P_obs R1 mut_day2
S1P_obs mutant 2.07 0 sd_S1P_obs R2 mut_day2
S1P_obs mutant 2.07 0 sd_S1P_obs R3 mut_day2
S1P_obs mutant 2.07 0 sd_S1P_obs R4 mut_day2
S1P_obs mutant 2.07 0 sd_S1P_obs R5 mut_day2
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R1 wt_day2
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R2 wt_day2
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R3 wt_day2
Sphinga_obs wild_type 0.000732 0 sd_Sphinga_obs R4 wt_day2
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R1 wt_day4
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R2 wt_day4
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R3 wt_day4
Sphinga_obs wild_type 0.0001601119722584617 2 sd_Sphinga_obs R4 wt_day4
Cer_obs wild_type 0.988 0 sd_Cer_obs R1 wt_day2
Cer_obs wild_type 0.988 0 sd_Cer_obs R2 wt_day2
Cer_obs wild_type 0.988 0 sd_Cer_obs R3 wt_day2
Cer_obs wild_type 0.988 0 sd_Cer_obs R4 wt_day2
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R1 wt_day4
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R2 wt_day4
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R3 wt_day4
Cer_obs wild_type 0.6974072504687345 2 sd_Cer_obs R4 wt_day4
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R1 wt_day2
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R2 wt_day2
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R3 wt_day2
Sphingo_obs wild_type 0.000395 0 sd_Sphingo_obs R4 wt_day2
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R1 wt_day4
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R2 wt_day4
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R3 wt_day4
Sphingo_obs wild_type 0.0002427001845696418 2 sd_Sphingo_obs R4 wt_day4
S1P_obs wild_type 1.551 0 sd_S1P_obs R1 wt_day4
S1P_obs wild_type 1.551 0 sd_S1P_obs R2 wt_day2
S1P_obs wild_type 1.551 0 sd_S1P_obs R3 wt_day2
S1P_obs wild_type 1.551 0 sd_S1P_obs R4 wt_day2
S1P_obs wild_type 1.551 0 sd_S1P_obs R5 wt_day2
Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
plotId plotName plotTypeData xLabel yValues yLabel yScale
plot1 highandlow MeanAndSD Time Sphinga_obs Concentration [area ratio/Protein] log10
plot1 highandlow MeanAndSD Time Cer_obs Concentration [area ratio/Protein] log10
plot1 highandlow MeanAndSD Time Sphingo_obs Concentration [area ratio/Protein] log10
plot1 highandlow MeanAndSD Time S1P_obs Relative Concentration log10
plotId plotName plotTypeSimulation plotTypeData xLabel yValues yLabel datasetId
Fig4k_Sphinganine Sphinganine (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Sphinga_obs Concentration [area ratio/Protein] wt_day2
Fig4k_Sphinganine Sphinganine (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Sphinga_obs Concentration [area ratio/Protein] mut_day2
Fig4k_Sphinganine Sphinganine (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Sphinga_obs Concentration [area ratio/Protein] wt_day4
Fig4k_Sphinganine Sphinganine (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Sphinga_obs Concentration [area ratio/Protein] mut_day4
Fig4k_Ceramide Ceramide (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Cer_obs Concentration [area ratio/Protein] wt_day2
Fig4k_Ceramide Ceramide (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Cer_obs Concentration [area ratio/Protein] mut_day2
Fig4k_Ceramide Ceramide (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Cer_obs Concentration [area ratio/Protein] wt_day4
Fig4k_Ceramide Ceramide (with neg. feedback to $k_{00}$ (ODE)) BarPlot MeanAndSD Genotype and days past fertilization (dpf) Cer_obs Concentration [area ratio/Protein] mut_day4

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