Add setup.py

README.md

@@ -0,0 +1 @@
+**refGene-sort**

refgene_sort/__init__.py

@@ -0,0 +1 @@
+__import__("pkg_resources").declare_namespace(__name__)

refgene_sort.py → refgene_sort/main.py

@@ -5,7 +5,7 @@
 import os
 
 
-CREATE_REFGENE_TABLE_SCRIPT=open('create_refgene_table.sql', 'r').read()
+CREATE_REFGENE_TABLE_SCRIPT=open(os.path.join(os.path.dirname(os.path.abspath(__file__)),'create_refgene_table.sql'), 'r').read()
 
 
 def arg_parser():

refgene_sort/refgene-sort.py

@@ -0,0 +1,7 @@
+#!/usr/bin/env python
+import sys
+
+from main import main
+
+if __name__ == "__main__":
+    sys.exit(main(sys.argv[1:]))

setup.py

@@ -0,0 +1,25 @@
+from setuptools import setup, find_packages
+import os
+
+setup(
+    name='refgene-sort',
+    description='refGene sort utility',
+    long_description=open(os.path.join(os.path.dirname(__file__), 'README.md')).read(),
+    version='v0.0.1',
+    url='https://github.com/Barski-lab/refgene-sort',
+    download_url=('https://github.com/Barski-lab/refgene-sort'),
+    author='Michael Kotliar',
+    author_email='[email protected]',
+    license = 'Apache 2.0',
+    packages=find_packages(),
+    package_data={'refgene_sort': ['*.sql']},
+    install_requires=[
+        'argparse'
+    ],
+    zip_safe=False,
+    entry_points={
+        'console_scripts': [
+            "refgene-sort=refgene_sort.main:main"
+        ]
+    }
+)