BCDC Cloud Computing Environment Charter #1
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Initial commit of the charter.
Added description.
Added pipeline definition
Update in scope item
| - To create and maintain a cloud native, horizontally scalable environment for use by the BICCN Community. | ||
| - To work with community member to bring data processing pipelines used by the community or of value to the community into the cloud computing envrinment so they may be operated at scale. | ||
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| ## In-scope |
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Should something be considered in scope to maintain and upgrade pipelines depending on updates to genomes etc (not sure if this happens regularly enough to impact us for this grant)
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Yes, absolutely
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For consideration:
To support the enrichment of the integrated dataset within the BCDC Cell Registry to facilitate linkage between datasets, modalities and updates through integration of secondary analysis and features extraction pipelines into the computing environment supporting access to data in the BCDC Cell Registry and data archives and publishing results back to the BCDC Cell Registry and data archives.
Update to explicitly indicate updating pipelines is in scope.
| **pipeline:** A collection of one or more functional tasks that operate on input data and, from that, transform the input data, or derive features often used to interpret the input data. In a high throughput setting, these tasks are often automated to be performed in a batch setting. | ||
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| ## Objectives | ||
| - To create and maintain a cloud native, horizontally scalable environment for use by the BICCN Community. |
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Is this limited to processing of molecular *omics data, or could they cover other modalities in the future? (I think the current members know this, but a new member might not)
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will state and clarify potential other areas.
| - To leverage data-driven feedback from the consortium to update data processing pipelines focusing on improvement to both science and engineering performance. These updates will be versioned and documented. | ||
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| ## In-scope | ||
| - Connect data flow from BICCN Ingest services and archives to the BCDC Cloud Computing Environment to enable the processing of sequence-based data. |
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I think this is related to my question on the first objective.
Co-Authored-By: Tom Gillespie <[email protected]>
Co-Authored-By: Tom Gillespie <[email protected]>
Please review the charter for the BCDC Cloud computing environment.