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update README
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sunliang3361 committed May 24, 2018
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Expand Up @@ -57,7 +57,7 @@ Running the following will create a project directory named 'fnb' relative to wh

`fnbalign -n fnb -g example/mt4_chr1_2Mb.fa -1 example/mt4_chr1_raw_20x1.fq example/mt4_chr1_mut_20x1.fq -2 example/mt4_chr1_raw_20x2.fq example/mt4_chr1_mut_20x2.fq`

If the mutant pool sample is contaminated or users need to output all deletions with frequencies for their samples, please use option '-e' to output all deletions with reads number in the deletion region for Step2 example 1.1. Data process for this option is a little slower.
If the mutant pool sample is contaminated or users need to output all deletions with frequencies for their samples, please use option '-e' to output all deletions with reads number in the deletion region for Step2 example 1.1. Data process for this option may be slow.
`fnbalign -n fnb -g example/mt4_chr1_2Mb.fa -1 example/mt4_chr1_raw_20x1.fq example/mt4_chr1_mut_20x1.fq -2 example/mt4_chr1_raw_20x2.fq example/mt4_chr1_mut_20x2.fq -e`

### Output:
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