Capture qualimap outputs #27
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| on: | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| name: Tests | |
| jobs: | |
| test: | |
| name: Run tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: create artifacts dir to save test logs | |
| run: mkdir artifacts | |
| - name: Install Miniconda | |
| run: bash .github/scripts/install_conda.sh | |
| - name: Install Nextflow | |
| run: bash .github/scripts/install_nextflow.sh | |
| - name: Test against previous release | |
| run: bash .github/scripts/test_against_previous_release.sh | |
| - name: if failure, add latest NF log to artifacts | |
| run: mv .nextflow.log artifacts/failure.nextflow.log && mv work artifacts/work_failed | |
| if: failure() | |
| - uses: actions/upload-artifact@v1 | |
| if: always() | |
| with: | |
| name: test_artifacts | |
| path: artifacts |