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remove cwl-auto from actions
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pdiercks committed May 21, 2024
1 parent 0b2877f commit 53f9cce
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29 changes: 0 additions & 29 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -72,35 +72,6 @@ jobs:
retention-days: 1
if-no-files-found: error

run-cwl-auto-conda:
runs-on: ubuntu-latest

steps:
- name: checkout-repository
uses: actions/checkout@v2

- name: install-basic-deps
uses: ./.github/actions/install-basic-deps

- name: prepare-conda
uses: conda-incubator/setup-miniconda@v2

- name: run-workflow
shell: bash -l {0}
run: |
sudo apt-get update && sudo apt-get install --no-install-recommends --yes python3-pip
python3 -m pip install cwltool[deps]
cd $GITHUB_WORKSPACE/exemplary_workflow/cwl
python3 -m cwltool --debug --beta-conda-dependencies wf_run_exemplary_wf.cwl
- name: upload-paper-artifact
uses: actions/upload-artifact@v2
with:
name: paper
path: ./exemplary_workflow/cwl/paper.pdf
retention-days: 1
if-no-files-found: error

run-nextflow:
runs-on: ubuntu-latest

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