slight_adjust #188
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This is a simple workflow to run unit tests and code coverage | |
| name: Build | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push and PRs | |
| push: | |
| pull_request: | |
| branches: [ main ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| check-codeclimate-credentials: | |
| name: Check CodeClimate credentials | |
| runs-on: ubuntu-latest | |
| outputs: | |
| has_credentials: ${{ steps.setvar.outputs.has_credentials }} | |
| steps: | |
| - name: Check secrets | |
| id: setvar | |
| run: | | |
| if [[ "${{ secrets.CODECLIMATE_TEST_REPORTER_ID }}" != "" ]]; \ | |
| then | |
| echo "Credentials to access CodeClimate found" | |
| echo has_credentials="true" >> $GITHUB_OUTPUT | |
| else | |
| echo "Credentials to access CodeClimate not found" | |
| echo has_credentials="false" >> $GITHUB_OUTPUT | |
| fi | |
| build-icetray: | |
| name: Unit tests - IceTray | |
| needs: [ check-codeclimate-credentials ] | |
| runs-on: ubuntu-latest | |
| container: | |
| image: icecube/icetray:icetray-prod-v1.8.1-ubuntu20.04-X64 | |
| options: --user root | |
| steps: | |
| - name: install git | |
| run: | | |
| apt-get --yes install sudo | |
| sudo apt update --fix-missing --yes | |
| sudo apt upgrade --yes | |
| sudo apt-get install --yes git-all | |
| - name: Set environment variables | |
| run: | | |
| echo "PATH=/usr/local/icetray/bin:$PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=/usr/local/icetray/lib:$PYTHONPATH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=/usr/local/icetray/lib:/usr/local/icetray/cernroot/lib:/usr/local/icetray/lib/tools:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| - uses: actions/checkout@v3 | |
| - name: Print available disk space before graphnet install | |
| run: df -h | |
| - name: Upgrade packages already installed on icecube/icetray | |
| run: | | |
| pip install --upgrade astropy # Installed version incompatible with numpy 1.23.0 [https://github.com/astropy/astropy/issues/12534] | |
| pip install --ignore-installed PyYAML # Distutils installed [https://github.com/pypa/pip/issues/5247] | |
| pip install --upgrade psutil # Original version from IceTray Environment incompatible | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| with: | |
| editable: true | |
| - name: Print packages in pip | |
| run: | | |
| pip show torch | |
| pip show torch-geometric | |
| pip show torch-cluster | |
| pip show torch-sparse | |
| pip show torch-scatter | |
| pip show jammy_flows | |
| - name: Run unit tests and generate coverage report | |
| run: | | |
| coverage run --source=graphnet -m pytest tests/ --ignore=tests/examples/04_training --ignore=tests/utilities | |
| coverage run -a --source=graphnet -m pytest tests/examples/04_training | |
| coverage run -a --source=graphnet -m pytest tests/utilities | |
| coverage xml -o coverage.xml | |
| - name: Work around permission issue | |
| run: | | |
| git config --global --add safe.directory /__w/graphnet/graphnet | |
| - name: Publish code coverage | |
| uses: paambaati/[email protected] | |
| if: needs.check-codeclimate-credentials.outputs.has_credentials == 'true' | |
| env: | |
| CC_TEST_REPORTER_ID: ${{ secrets.CODECLIMATE_TEST_REPORTER_ID }} | |
| with: | |
| coverageCommand: coverage report | |
| coverageLocations: coverage.xml:coverage.py | |
| build-matrix: | |
| name: Unit tests - Python versions | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Print available disk space before graphnet install | |
| run: df -h | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| with: | |
| editable: true | |
| - name: Print available disk space after graphnet install | |
| run: df -h | |
| - name: Print packages in pip | |
| run: | | |
| pip show torch | |
| pip show torch-geometric | |
| pip show torch-cluster | |
| pip show torch-sparse | |
| pip show torch-scatter | |
| pip show numpy | |
| - name: Run unit tests and generate coverage report | |
| run: | | |
| set -o pipefail # To propagate exit code from pytest | |
| coverage run --source=graphnet -m pytest tests/ --ignore=tests/utilities --ignore=tests/data/ --ignore=tests/deployment/ --ignore=tests/examples/01_icetray/ | |
| coverage run -a --source=graphnet -m pytest tests/utilities | |
| coverage report -m | |
| - name: Print available disk space after unit tests | |
| run: df -h | |
| build-macos: | |
| name: Unit tests - macOS | |
| runs-on: macos-13 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| with: | |
| editable: true | |
| hardware: "cpu" | |
| - name: Print packages in pip | |
| run: | | |
| pip show torch | |
| pip show torch-geometric | |
| pip show torch-cluster | |
| pip show torch-sparse | |
| pip show torch-scatter | |
| - name: Run unit tests and generate coverage report | |
| run: | | |
| set -o pipefail # To propagate exit code from pytest | |
| coverage run --source=graphnet -m pytest tests/ --ignore=tests/data/ --ignore=tests/deployment/ --ignore=tests/examples/ --ignore=tests/utilities | |
| coverage run -a --source=graphnet -m pytest tests/utilities | |
| coverage report -m | |
| docs: | |
| name: Documentation Compilation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install package | |
| uses: ./.github/actions/install | |
| - name: Build documentation | |
| run: | | |
| cd docs | |
| make clean | |
| sphinx-apidoc \ | |
| --module-first \ | |
| --separate \ | |
| --force \ | |
| -d 2 \ | |
| --templatedir=source/_templates/ \ | |
| -o source/api ../src/ | |
| sed -i "2s/.*/API/" source/api/graphnet.rst | |
| make html |