add app launcher in installer folder #210
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| name: Build executable for Windows | ||
| on: | ||
| push: | ||
| branches: [ "main" ] | ||
| pull_request: | ||
| branches: [ "main" ] | ||
| workflow_dispatch: | ||
| env: | ||
| OPENMS_VERSION: 3.2.0 | ||
| # Define needed TOPP tools here | ||
| TOPP_TOOLS: "FeatureFinderMetabo FeatureLinkerUnlabeledKD SiriusExport" | ||
| jobs: | ||
| build-openms: | ||
| runs-on: windows-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| repository: OpenMS/OpenMS | ||
| ref: release/${{ env.OPENMS_VERSION }} | ||
| path: 'OpenMS' | ||
| - name: Install Qt | ||
| uses: jurplel/install-qt-action@v4 | ||
| with: | ||
| version: '5.15.2' # 5.12.7 is broken https://bugreports.qt.io/browse/QTBUG-81715, > 5.15.2 is not available on official archives (https://github.com/miurahr/aqtinstall/issues/636) | ||
| host: 'windows' # default: win64_msvc2017_64 | ||
| target: 'desktop' | ||
| install-deps: 'true' | ||
| cache: 'false' | ||
| aqtversion: '==3.1.*' | ||
| # https://github.com/marketplace/actions/visual-studio-shell | ||
| - name: Set up Visual Studio shell | ||
| uses: egor-tensin/vs-shell@v2 | ||
| with: | ||
| arch: x64 | ||
| - name: Setup build tools | ||
| shell: bash | ||
| run: | | ||
| choco install ccache ninja cmake | ||
| ## GH CLI "SHOULD BE" installed. Sometimes I had to manually install nonetheless. Super weird. | ||
| # https://github.com/actions/runner-images/blob/main/images/win/scripts/Installers/Install-GitHub-CLI.ps1 | ||
| echo "C:/Program Files (x86)/GitHub CLI" >> $GITHUB_PATH | ||
| - name: Extract branch/PR infos | ||
| shell: bash | ||
| run: | | ||
| cd OpenMS | ||
| RUN_NAME_LOCAL=$(echo ${GITHUB_REF#refs/heads/} | tr / -) | ||
| echo "RUN_NAME=${RUN_NAME_LOCAL}" >> $GITHUB_ENV | ||
| echo "BASE_REF=$(gh pr view --json baseRefName -q .baseRefName || echo ${RUN_NAME_LOCAL})" >> $GITHUB_ENV | ||
| id: extract_branch | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| - name: Cache contrib | ||
| id: cache-contrib-win | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: ${{ github.workspace }}/OpenMS/contrib | ||
| key: ${{ runner.os }}-contrib3 | ||
| - name: Load contrib build | ||
| if: steps.cache-contrib-win.outputs.cache-hit != 'true' | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| cd OpenMS/contrib | ||
| # Download the file using the URL fetched from GitHub | ||
| gh release download -R OpenMS/contrib --pattern 'contrib_build-Windows.tar.gz' | ||
| # Extract the archive | ||
| 7z x -so contrib_build-Windows.tar.gz | 7z x -si -ttar | ||
| rm contrib_build-Windows.tar.gz | ||
| ls | ||
| - name: Setup ccache cache | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: .ccache | ||
| key: ${{ runner.os }}-ccache-${{ env.RUN_NAME }}-${{ github.run_number }} | ||
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | ||
| restore-keys: | | ||
| ${{ runner.os }}-ccache-${{ env.RUN_NAME }} | ||
| ${{ runner.os }}-ccache-${{ env.BASE_REF }} | ||
| ${{ runner.os }}-ccache- | ||
| - name: Add THIRDPARTY | ||
| shell: bash | ||
| run: | | ||
| # initialize THIRDPARTY | ||
| cd OpenMS | ||
| git submodule update --init THIRDPARTY | ||
| cd .. | ||
| # add third-party binaries to PATH | ||
| # use flat THIRDPARTY structure | ||
| mkdir -p _thirdparty | ||
| cp -R OpenMS/THIRDPARTY/Windows/64bit/* _thirdparty/ | ||
| cp -R OpenMS/THIRDPARTY/All/* _thirdparty/ | ||
| # add third-party binaries to PATH | ||
| for thirdpartytool in ${{ github.workspace }}/_thirdparty/* | ||
| do | ||
| echo $thirdpartytool >> $GITHUB_PATH | ||
| done | ||
| - name: Build Windows | ||
| shell: bash | ||
| run: | | ||
| mkdir $GITHUB_WORKSPACE/OpenMS/bld/ | ||
| ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cibuild.cmake | ||
| env: | ||
| #OS_PREFIX_PATH: "${{ env.Qt5_DIR }}/lib/cmake;${{ env.Qt5_DIR }}" | ||
| OPENMS_CONTRIB_LIBS: "${{ github.workspace }}/OpenMS/contrib" | ||
| CI_PROVIDER: "GitHub-Actions" | ||
| CMAKE_GENERATOR: "Ninja" | ||
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | ||
| BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}" | ||
| ENABLE_STYLE_TESTING: "OFF" | ||
| ENABLE_TOPP_TESTING: "ON" | ||
| ENABLE_CLASS_TESTING: "ON" | ||
| WITH_GUI: "OFF" | ||
| ADDRESS_SANITIZER: "Off" | ||
| BUILD_TYPE: "Release" | ||
| OPENMP: "Off" | ||
| USE_STATIC_BOOST: "On" | ||
| # BUILD_FLAGS: "-p:CL_MPCount=2" # For VS Generator and MSBuild | ||
| BUILD_FLAGS: "-j2" # Ninja will otherwise use all cores (doesn't go well in GHA) | ||
| CMAKE_CCACHE_EXE: "ccache" | ||
| CCACHE_BASEDIR: ${{ github.workspace }} | ||
| CCACHE_DIR: ${{ github.workspace }}/.ccache | ||
| CCACHE_COMPRESS: true | ||
| CCACHE_COMPRESSLEVEL: 12 | ||
| CCACHE_MAXSIZE: 400M | ||
| - name: Test Windows | ||
| shell: bash | ||
| run: ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/citest.cmake | ||
| env: | ||
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | ||
| CI_PROVIDER: "GitHub-Actions" | ||
| BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}" | ||
| - name: Package | ||
| shell: bash | ||
| run: | | ||
| ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cipackage.cmake | ||
| env: | ||
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | ||
| PACKAGE_TYPE: zip | ||
| SEARCH_ENGINES_DIRECTORY: "${{ github.workspace }}/_thirdparty" | ||
| CI_PROVIDER: "GitHub-Actions" | ||
| CPACK_PACKAGE_FILE_NAME: "openms-package" | ||
| - name: Upload package as artifact | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: openms-package | ||
| path: ${{ github.workspace }}/OpenMS/bld/*.zip | ||
| build-executable: | ||
| runs-on: windows-latest | ||
| needs: build-openms | ||
| env: | ||
| PYTHON_VERSION: 3.11.0 | ||
| APP_NAME: OpenMS-StreamlitTemplateApp | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - name: Download package as artifact | ||
| uses: actions/download-artifact@v4 | ||
| with: | ||
| name: openms-package | ||
| path: openms-package | ||
| - name: Extract bin and share from package | ||
| run: | | ||
| cd openms-package | ||
| unzip "*.zip" -d . | ||
| cp -r openms-package/bin ../openms-bin | ||
| cp -r openms-package/share ../share | ||
| - name: Setup python embeddable version | ||
| run: | | ||
| mkdir python-${{ env.PYTHON_VERSION }} | ||
| curl -O https://www.python.org/ftp/python/${{ env.PYTHON_VERSION }}/python-${{ env.PYTHON_VERSION }}-embed-amd64.zip | ||
| unzip python-${{ env.PYTHON_VERSION }}-embed-amd64.zip -d python-${{ env.PYTHON_VERSION }} | ||
| rm python-${{ env.PYTHON_VERSION }}-embed-amd64.zip | ||
| - name: Install pip | ||
| run: | | ||
| curl -O https://bootstrap.pypa.io/get-pip.py | ||
| ./python-${{ env.PYTHON_VERSION }}/python get-pip.py --no-warn-script-location | ||
| rm get-pip.py | ||
| - name: Uncomment 'import site' in python311._pth file | ||
| run: | | ||
| sed -i 's/#import site/import site/' python-${{ env.PYTHON_VERSION }}/python311._pth | ||
| - name: Install Required Packages | ||
| run: .\python-${{ env.PYTHON_VERSION }}\python -m pip install --force-reinstall -r requirements.txt --no-warn-script-location | ||
| - name: Set to offline deployment | ||
| run: | | ||
| $content = Get-Content -Raw settings.json | ConvertFrom-Json | ||
| $content.online_deployment = $false | ||
| $content | ConvertTo-Json -Depth 100 | Set-Content settings.json | ||
| - name: Create All-in-one executable folder | ||
| run: | | ||
| mkdir streamlit_exe | ||
| mv python-${{ env.PYTHON_VERSION }} streamlit_exe | ||
| cp -r src streamlit_exe | ||
| cp -r content streamlit_exe | ||
| cp -r docs streamlit_exe | ||
| cp -r assets streamlit_exe | ||
| cp -r example-data streamlit_exe | ||
| cp openms-bin/*.dll streamlit_exe | ||
| cp -r .streamlit streamlit_exe | ||
| cp -r share streamlit_exe/share | ||
| cp app.py streamlit_exe | ||
| cp settings.json streamlit_exe | ||
| cp default-parameters.json streamlit_exe | ||
| $files = $env:TOPP_TOOLS -split ' ' | ||
| foreach ($file in $files) { | ||
| Copy-Item "openms-bin/${file}.exe" -Destination "streamlit_exe/${file}.exe" | ||
| } | ||
| - name: Install WiX Toolset | ||
| run: | | ||
| curl -LO https://github.com/wixtoolset/wix3/releases/download/wix3111rtm/wix311-binaries.zip | ||
| unzip wix311-binaries.zip -d wix | ||
| rm wix311-binaries.zip | ||
| - name: build .wxs for streamlit_exe folder | ||
| run: | | ||
| ./wix/heat.exe dir streamlit_exe -gg -sfrag -sreg -srd -template component -cg StreamlitExeFiles -dr INSTALLFOLDER -out streamlit_exe_files.wxs | ||
| - name: Prepare SourceDir | ||
| run: | | ||
| mkdir SourceDir | ||
| mv streamlit_exe/* SourceDir | ||
| cp dummy_license.rtf SourceDir | ||
| cp assets/openms.ico SourceDir | ||
| - name: Generate WiX XML file | ||
| run: | | ||
| echo '<?xml version="1.0"?>' > streamlit_exe.wxs | ||
| echo '<Wix xmlns="http://schemas.microsoft.com/wix/2006/wi">' >> streamlit_exe.wxs | ||
| echo ' <Product Id="*" Name="${{ env.APP_NAME }}" Language="1033" Version="1.0.0.0" Manufacturer="OpenMS" UpgradeCode="8d28e8c7-45dc-446c-b889-99a6aea2f1a5">' >> streamlit_exe.wxs | ||
| echo ' <Package InstallerVersion="500" Compressed="yes" InstallScope="perMachine"/>' >> streamlit_exe.wxs | ||
| echo ' <Media Id="1" Cabinet="streamlit.cab" EmbedCab="yes" />' >> streamlit_exe.wxs | ||
| echo ' <Property Id="WIXUI_INSTALLDIR" Value="INSTALLFOLDER" />' >> streamlit_exe.wxs | ||
| echo ' <Property Id="INSTALLFOLDER" Secure="yes" />' >> streamlit_exe.wxs | ||
| echo ' <Directory Id="TARGETDIR" Name="SourceDir">' >> streamlit_exe.wxs | ||
| echo ' <Directory Id="ProgramFilesFolder">' >> streamlit_exe.wxs | ||
| echo ' <Directory Id="INSTALLFOLDER" Name="StreamlitApp" />' >> streamlit_exe.wxs | ||
| echo ' </Directory>' >> streamlit_exe.wxs | ||
| echo ' <Directory Id="DesktopFolder" />' >> streamlit_exe.wxs | ||
| echo ' </Directory>' >> streamlit_exe.wxs | ||
| echo ' <Feature Id="MainFeature" Title="Main Application" Level="1">' >> streamlit_exe.wxs | ||
| echo ' <ComponentGroupRef Id="StreamlitExeFiles" />' >> streamlit_exe.wxs | ||
| echo ' <ComponentRef Id="DesktopShortcutComponent" />' >> streamlit_exe.wxs | ||
| echo ' <ComponentRef Id="InstallDirShortcutComponent" />' >> streamlit_exe.wxs | ||
| echo ' </Feature>' >> streamlit_exe.wxs | ||
| echo ' <Component Id="DesktopShortcutComponent" Guid="3597b243-9180-4d0b-b105-30d8b0d1a334" Directory="DesktopFolder">' >> streamlit_exe.wxs | ||
| echo ' <Shortcut Id="DesktopShortcut" Name="${{ env.APP_NAME }}" Description="Launch ${{ env.APP_NAME }}" Target="[INSTALLFOLDER]${{ env.APP_NAME }}.bat" WorkingDirectory="INSTALLFOLDER" Icon="AppIcon"/>' >> streamlit_exe.wxs | ||
| echo ' <RegistryValue Root="HKCU" Key="Software\OpenMS\${{ env.APP_NAME }}" Name="DesktopShortcut" Type="integer" Value="1" KeyPath="yes" />' >> streamlit_exe.wxs | ||
| echo ' </Component>' >> streamlit_exe.wxs | ||
| echo ' <Component Id="InstallDirShortcutComponent" Guid="c2df9472-3b45-4558-a56d-6034cf7c8b72" Directory="INSTALLFOLDER">' >> streamlit_exe.wxs | ||
| echo ' <Shortcut Id="DesktopShortcut" Name="${{ env.APP_NAME }}" Description="Launch ${{ env.APP_NAME }}" Target="[INSTALLFOLDER]${{ env.APP_NAME }}.bat" WorkingDirectory="INSTALLFOLDER" Icon="AppIcon"/>' >> streamlit_exe.wxs | ||
| echo ' <RegistryValue Root="HKCU" Key="Software\OpenMS\${{ env.APP_NAME }}" Name="InstallFolderShortcut" Type="integer" Value="1" KeyPath="yes" />' >> streamlit_exe.wxs | ||
| echo ' </Component>' >> streamlit_exe.wxs | ||
| echo ' <Icon Id="AppIcon" SourceFile="SourceDir/openms.ico" />' >> streamlit_exe.wxs | ||
| echo ' <CustomAction Id="ReadMeFile" Directory="INSTALLFOLDER" Execute="deferred" Return="check"' >> streamlit_exe.wxs | ||
| echo ' ExeCommand="cmd.exe /c echo Welcome to ${{ env.APP_NAME }}! > [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo. >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo To launch the application: >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo 1. Navigate to the installation directory. >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo 2. Double-click on the file: ${{ env.APP_NAME }}.bat or ${{ env.APP_NAME }} shortcut. >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo. >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo Additional Information: >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo - If multiple Streamlit apps are running on your computer and you encounter a port conflict, you can change the port in the .streamlit\config.toml file located in your user directory. >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo Example: >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo [server] >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo port = 8502 >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo - For more details on Streamlit, visit: https://streamlit.io/ >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo. >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo Need Help? >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo - Join our Discord server for support and community discussions: >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo https://discord.com/invite/4TAGhqJ7s5 >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo. >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' && echo Thank you for using ${{ env.APP_NAME }}! >> [INSTALLFOLDER]Readme.txt ^' >> streamlit_exe.wxs | ||
| echo ' <CustomAction Id="CreateBatFile" Directory="INSTALLFOLDER" Execute="deferred" Return="check"' >> streamlit_exe.wxs | ||
| echo ' ExeCommand="cmd.exe /c echo @echo off > [INSTALLFOLDER]${{ env.APP_NAME }}.bat && echo [INSTALLFOLDER]python-${{ env.PYTHON_VERSION }}\\python.exe -m streamlit run [INSTALLFOLDER]app.py local >> [INSTALLFOLDER]${{ env.APP_NAME }}.bat" />' >> streamlit_exe.wxs | ||
| echo ' <CustomAction Id="RunApp" Directory="INSTALLFOLDER" Execute="deferred" Return="asyncNoWait"' >> streamlit_exe.wxs | ||
| echo ' ExeCommand="cmd.exe /c "[INSTALLFOLDER]${{ env.APP_NAME }}.bat"" />' >> streamlit_exe.wxs | ||
| echo ' <InstallExecuteSequence>' >> streamlit_exe.wxs | ||
| echo ' <Custom Action="ReadMeFile" After="InstallFiles">NOT REMOVE</Custom>' >> streamlit_exe.wxs | ||
| echo ' <Custom Action="CreateBatFile" After="InstallFiles">NOT REMOVE</Custom>' >> streamlit_exe.wxs | ||
| echo ' <Custom Action="RunApp" Before="InstallFinalize">NOT REMOVE</Custom>' >> streamlit_exe.wxs #todo remove these files during uninstallation | ||
| echo ' </InstallExecuteSequence>' >> streamlit_exe.wxs | ||
| echo ' <UI>' >> streamlit_exe.wxs | ||
| echo ' <UIRef Id="WixUI_InstallDir" />' >> streamlit_exe.wxs | ||
| echo ' <UIRef Id="WixUI_ErrorProgressText" />' >> streamlit_exe.wxs | ||
| echo ' </UI>' >> streamlit_exe.wxs | ||
| echo ' <WixVariable Id="WixUILicenseRtf" Value="SourceDir/dummy_license.rtf" />' >> streamlit_exe.wxs | ||
| echo ' </Product>' >> streamlit_exe.wxs | ||
| echo '</Wix>' >> streamlit_exe.wxs | ||
| - name: Build msi | ||
| run: | | ||
| ./wix/candle.exe streamlit_exe.wxs streamlit_exe_files.wxs | ||
| ./wix/light.exe -ext WixUIExtension -sice:ICE60 -o ${{ env.APP_NAME }}.msi streamlit_exe_files.wixobj streamlit_exe.wixobj | ||
| - name: Delete OpenMS bin artifact | ||
| uses: geekyeggo/delete-artifact@v5 | ||
| with: | ||
| name: openms-package | ||
| - name: Archive build artifacts | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: ${{ env.APP_NAME }} | ||
| path: | | ||
| ${{ env.APP_NAME }}.msi | ||
