should work in actual pipeline #209
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build executable for Windows | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| workflow_dispatch: | |
| env: | |
| OPENMS_VERSION: 3.2.0 | |
| # Define needed TOPP tools here | |
| TOPP_TOOLS: "FeatureFinderMetabo FeatureLinkerUnlabeledKD SiriusExport" | |
| jobs: | |
| build-openms: | |
| runs-on: windows-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: OpenMS/OpenMS | |
| ref: release/${{ env.OPENMS_VERSION }} | |
| path: 'OpenMS' | |
| - name: Install Qt | |
| uses: jurplel/install-qt-action@v4 | |
| with: | |
| version: '5.15.2' # 5.12.7 is broken https://bugreports.qt.io/browse/QTBUG-81715, > 5.15.2 is not available on official archives (https://github.com/miurahr/aqtinstall/issues/636) | |
| host: 'windows' # default: win64_msvc2017_64 | |
| target: 'desktop' | |
| install-deps: 'true' | |
| cache: 'false' | |
| aqtversion: '==3.1.*' | |
| # https://github.com/marketplace/actions/visual-studio-shell | |
| - name: Set up Visual Studio shell | |
| uses: egor-tensin/vs-shell@v2 | |
| with: | |
| arch: x64 | |
| - name: Setup build tools | |
| shell: bash | |
| run: | | |
| choco install ccache ninja cmake | |
| ## GH CLI "SHOULD BE" installed. Sometimes I had to manually install nonetheless. Super weird. | |
| # https://github.com/actions/runner-images/blob/main/images/win/scripts/Installers/Install-GitHub-CLI.ps1 | |
| echo "C:/Program Files (x86)/GitHub CLI" >> $GITHUB_PATH | |
| - name: Extract branch/PR infos | |
| shell: bash | |
| run: | | |
| cd OpenMS | |
| RUN_NAME_LOCAL=$(echo ${GITHUB_REF#refs/heads/} | tr / -) | |
| echo "RUN_NAME=${RUN_NAME_LOCAL}" >> $GITHUB_ENV | |
| echo "BASE_REF=$(gh pr view --json baseRefName -q .baseRefName || echo ${RUN_NAME_LOCAL})" >> $GITHUB_ENV | |
| id: extract_branch | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Cache contrib | |
| id: cache-contrib-win | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ github.workspace }}/OpenMS/contrib | |
| key: ${{ runner.os }}-contrib3 | |
| - name: Load contrib build | |
| if: steps.cache-contrib-win.outputs.cache-hit != 'true' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| cd OpenMS/contrib | |
| # Download the file using the URL fetched from GitHub | |
| gh release download -R OpenMS/contrib --pattern 'contrib_build-Windows.tar.gz' | |
| # Extract the archive | |
| 7z x -so contrib_build-Windows.tar.gz | 7z x -si -ttar | |
| rm contrib_build-Windows.tar.gz | |
| ls | |
| - name: Setup ccache cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-ccache-${{ env.RUN_NAME }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-ccache-${{ env.RUN_NAME }} | |
| ${{ runner.os }}-ccache-${{ env.BASE_REF }} | |
| ${{ runner.os }}-ccache- | |
| - name: Add THIRDPARTY | |
| shell: bash | |
| run: | | |
| # initialize THIRDPARTY | |
| cd OpenMS | |
| git submodule update --init THIRDPARTY | |
| cd .. | |
| # add third-party binaries to PATH | |
| # use flat THIRDPARTY structure | |
| mkdir -p _thirdparty | |
| cp -R OpenMS/THIRDPARTY/Windows/64bit/* _thirdparty/ | |
| cp -R OpenMS/THIRDPARTY/All/* _thirdparty/ | |
| # add third-party binaries to PATH | |
| for thirdpartytool in ${{ github.workspace }}/_thirdparty/* | |
| do | |
| echo $thirdpartytool >> $GITHUB_PATH | |
| done | |
| - name: Build Windows | |
| shell: bash | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/OpenMS/bld/ | |
| ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cibuild.cmake | |
| env: | |
| #OS_PREFIX_PATH: "${{ env.Qt5_DIR }}/lib/cmake;${{ env.Qt5_DIR }}" | |
| OPENMS_CONTRIB_LIBS: "${{ github.workspace }}/OpenMS/contrib" | |
| CI_PROVIDER: "GitHub-Actions" | |
| CMAKE_GENERATOR: "Ninja" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}" | |
| ENABLE_STYLE_TESTING: "OFF" | |
| ENABLE_TOPP_TESTING: "ON" | |
| ENABLE_CLASS_TESTING: "ON" | |
| WITH_GUI: "OFF" | |
| ADDRESS_SANITIZER: "Off" | |
| BUILD_TYPE: "Release" | |
| OPENMP: "Off" | |
| USE_STATIC_BOOST: "On" | |
| # BUILD_FLAGS: "-p:CL_MPCount=2" # For VS Generator and MSBuild | |
| BUILD_FLAGS: "-j2" # Ninja will otherwise use all cores (doesn't go well in GHA) | |
| CMAKE_CCACHE_EXE: "ccache" | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 400M | |
| - name: Test Windows | |
| shell: bash | |
| run: ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/citest.cmake | |
| env: | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| CI_PROVIDER: "GitHub-Actions" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}" | |
| - name: Package | |
| shell: bash | |
| run: | | |
| ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cipackage.cmake | |
| env: | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| PACKAGE_TYPE: zip | |
| SEARCH_ENGINES_DIRECTORY: "${{ github.workspace }}/_thirdparty" | |
| CI_PROVIDER: "GitHub-Actions" | |
| CPACK_PACKAGE_FILE_NAME: "openms-package" | |
| - name: Upload package as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: openms-package | |
| path: ${{ github.workspace }}/OpenMS/bld/*.zip | |
| build-executable: | |
| runs-on: windows-latest | |
| needs: build-openms | |
| env: | |
| PYTHON_VERSION: 3.11.0 | |
| APP_NAME: OpenMS-StreamlitTemplateApp | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Download package as artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: openms-package | |
| path: openms-package | |
| - name: Extract bin and share from package | |
| run: | | |
| cd openms-package | |
| unzip "*.zip" -d . | |
| cp -r openms-package/bin ../openms-bin | |
| cp -r openms-package/share ../share | |
| - name: Setup python embeddable version | |
| run: | | |
| mkdir python-${{ env.PYTHON_VERSION }} | |
| curl -O https://www.python.org/ftp/python/${{ env.PYTHON_VERSION }}/python-${{ env.PYTHON_VERSION }}-embed-amd64.zip | |
| unzip python-${{ env.PYTHON_VERSION }}-embed-amd64.zip -d python-${{ env.PYTHON_VERSION }} | |
| rm python-${{ env.PYTHON_VERSION }}-embed-amd64.zip | |
| - name: Install pip | |
| run: | | |
| curl -O https://bootstrap.pypa.io/get-pip.py | |
| ./python-${{ env.PYTHON_VERSION }}/python get-pip.py --no-warn-script-location | |
| rm get-pip.py | |
| - name: Uncomment 'import site' in python311._pth file | |
| run: | | |
| sed -i 's/#import site/import site/' python-${{ env.PYTHON_VERSION }}/python311._pth | |
| - name: Install Required Packages | |
| run: .\python-${{ env.PYTHON_VERSION }}\python -m pip install --force-reinstall -r requirements.txt --no-warn-script-location | |
| - name: Set to offline deployment | |
| run: | | |
| $content = Get-Content -Raw settings.json | ConvertFrom-Json | |
| $content.online_deployment = $false | |
| $content | ConvertTo-Json -Depth 100 | Set-Content settings.json | |
| - name: Create All-in-one executable folder | |
| run: | | |
| mkdir streamlit_exe | |
| mv python-${{ env.PYTHON_VERSION }} streamlit_exe | |
| cp -r src streamlit_exe | |
| cp -r content streamlit_exe | |
| cp -r docs streamlit_exe | |
| cp -r assets streamlit_exe | |
| cp -r example-data streamlit_exe | |
| cp openms-bin/*.dll streamlit_exe | |
| cp -r .streamlit streamlit_exe | |
| cp -r share streamlit_exe/share | |
| cp app.py streamlit_exe | |
| cp settings.json streamlit_exe | |
| cp default-parameters.json streamlit_exe | |
| $files = $env:TOPP_TOOLS -split ' ' | |
| foreach ($file in $files) { | |
| Copy-Item "openms-bin/${file}.exe" -Destination "streamlit_exe/${file}.exe" | |
| } | |
| - name: Install WiX Toolset | |
| run: | | |
| curl -LO https://github.com/wixtoolset/wix3/releases/download/wix3111rtm/wix311-binaries.zip | |
| unzip wix311-binaries.zip -d wix | |
| rm wix311-binaries.zip | |
| - name: build .wxs for streamlit_exe folder | |
| run: | | |
| ./wix/heat.exe dir streamlit_exe -gg -sfrag -sreg -srd -template component -cg StreamlitExeFiles -dr INSTALLFOLDER -out streamlit_exe_files.wxs | |
| - name: Prepare SourceDir | |
| run: | | |
| mkdir SourceDir | |
| mv streamlit_exe/* SourceDir | |
| cp dummy_license.rtf SourceDir | |
| cp assets/openms.ico SourceDir | |
| - name: Generate WiX XML file | |
| run: | | |
| echo '<?xml version="1.0"?>' > streamlit_exe.wxs | |
| echo '<Wix xmlns="http://schemas.microsoft.com/wix/2006/wi">' >> streamlit_exe.wxs | |
| echo ' <Product Id="*" Name="${{ env.APP_NAME }}" Language="1033" Version="1.0.0.0" Manufacturer="OpenMS" UpgradeCode="8d28e8c7-45dc-446c-b889-99a6aea2f1a5">' >> streamlit_exe.wxs | |
| echo ' <Package InstallerVersion="500" Compressed="yes" InstallScope="perMachine"/>' >> streamlit_exe.wxs | |
| echo ' <Media Id="1" Cabinet="streamlit.cab" EmbedCab="yes" />' >> streamlit_exe.wxs | |
| echo ' <Property Id="WIXUI_INSTALLDIR" Value="INSTALLFOLDER" />' >> streamlit_exe.wxs | |
| echo ' <Property Id="INSTALLFOLDER" Secure="yes" />' >> streamlit_exe.wxs | |
| echo ' <Directory Id="TARGETDIR" Name="SourceDir">' >> streamlit_exe.wxs | |
| echo ' <Directory Id="ProgramFilesFolder">' >> streamlit_exe.wxs | |
| echo ' <Directory Id="INSTALLFOLDER" Name="StreamlitApp" />' >> streamlit_exe.wxs | |
| echo ' </Directory>' >> streamlit_exe.wxs | |
| echo ' <Directory Id="DesktopFolder" />' >> streamlit_exe.wxs | |
| echo ' </Directory>' >> streamlit_exe.wxs | |
| echo ' <Feature Id="MainFeature" Title="Main Application" Level="1">' >> streamlit_exe.wxs | |
| echo ' <ComponentGroupRef Id="StreamlitExeFiles" />' >> streamlit_exe.wxs | |
| echo ' <ComponentRef Id="DesktopShortcutComponent" />' >> streamlit_exe.wxs | |
| echo ' </Feature>' >> streamlit_exe.wxs | |
| echo ' <Component Id="DesktopShortcutComponent" Guid="3597b243-9180-4d0b-b105-30d8b0d1a334" Directory="DesktopFolder">' >> streamlit_exe.wxs | |
| echo ' <Shortcut Id="DesktopShortcut" Name="${{ env.APP_NAME }}" Description="Launch ${{ env.APP_NAME }}" Target="[INSTALLFOLDER]${{ env.APP_NAME }}.bat" WorkingDirectory="INSTALLFOLDER" Icon="AppIcon"/>' >> streamlit_exe.wxs | |
| echo ' <RegistryValue Root="HKCU" Key="Software\OpenMS\${{ env.APP_NAME }}" Name="DesktopShortcut" Type="integer" Value="1" KeyPath="yes" />' >> streamlit_exe.wxs | |
| echo ' </Component>' >> streamlit_exe.wxs | |
| echo ' <Icon Id="AppIcon" SourceFile="SourceDir/openms.ico" />' >> streamlit_exe.wxs | |
| echo ' <CustomAction Id="ReadMeFile" Directory="INSTALLFOLDER" Execute="deferred" Return="check"' >> streamlit_exe.wxs | |
| echo ' ExeCommand="cmd.exe /c echo Launch the ${{ env.APP_NAME }} by double-clicking the ${{ env.APP_NAME }}.bat file > [INSTALLFOLDER]Readme.txt" />' >> streamlit_exe.wxs | |
| echo ' <CustomAction Id="CreateBatFile" Directory="INSTALLFOLDER" Execute="deferred" Return="check"' >> streamlit_exe.wxs | |
| echo ' ExeCommand="cmd.exe /c echo @echo off > [INSTALLFOLDER]${{ env.APP_NAME }}.bat && echo [INSTALLFOLDER]python-${{ env.PYTHON_VERSION }}\\python.exe -m streamlit run [INSTALLFOLDER]app.py local >> [INSTALLFOLDER]${{ env.APP_NAME }}.bat" />' >> streamlit_exe.wxs | |
| echo ' <CustomAction Id="RunApp" Directory="INSTALLFOLDER" Execute="deferred" Return="asyncNoWait"' >> streamlit_exe.wxs | |
| echo ' ExeCommand="cmd.exe /c "[INSTALLFOLDER]${{ env.APP_NAME }}.bat"" />' >> streamlit_exe.wxs | |
| echo ' <InstallExecuteSequence>' >> streamlit_exe.wxs | |
| echo ' <Custom Action="ReadMeFile" After="InstallFiles">NOT REMOVE</Custom>' >> streamlit_exe.wxs | |
| echo ' <Custom Action="CreateBatFile" After="InstallFiles">NOT REMOVE</Custom>' >> streamlit_exe.wxs | |
| echo ' <Custom Action="RunApp" Before="InstallFinalize">NOT REMOVE</Custom>' >> streamlit_exe.wxs #todo remove these files during uninstallation | |
| echo ' </InstallExecuteSequence>' >> streamlit_exe.wxs | |
| echo ' <UI>' >> streamlit_exe.wxs | |
| echo ' <UIRef Id="WixUI_InstallDir" />' >> streamlit_exe.wxs | |
| echo ' <UIRef Id="WixUI_ErrorProgressText" />' >> streamlit_exe.wxs | |
| echo ' </UI>' >> streamlit_exe.wxs | |
| echo ' <WixVariable Id="WixUILicenseRtf" Value="SourceDir/dummy_license.rtf" />' >> streamlit_exe.wxs | |
| echo ' </Product>' >> streamlit_exe.wxs | |
| echo '</Wix>' >> streamlit_exe.wxs | |
| - name: Build msi | |
| run: | | |
| ./wix/candle.exe streamlit_exe.wxs streamlit_exe_files.wxs | |
| ./wix/light.exe -ext WixUIExtension -sice:ICE60 -o ${{ env.APP_NAME }}.msi streamlit_exe_files.wixobj streamlit_exe.wixobj | |
| - name: Delete OpenMS bin artifact | |
| uses: geekyeggo/delete-artifact@v5 | |
| with: | |
| name: openms-package | |
| - name: Archive build artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.APP_NAME }} | |
| path: | | |
| ${{ env.APP_NAME }}.msi |