Merge branch 'main' into feat-merge-detection-corrected

AllenNeuralDynamics · Aug 29, 2024 · bcdddd1 · bcdddd1
2 parents 2f7fc39 + cddb6c7
commit bcdddd1
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diff --git a/src/segmentation_skeleton_metrics/__init__.py b/src/segmentation_skeleton_metrics/__init__.py
@@ -2,4 +2,4 @@
 Package to evaluate a predicted segmentation.
 """
 
-__version__ = "4.5.5"
+__version__ = "4.6.0"
diff --git a/src/segmentation_skeleton_metrics/swc_utils.py b/src/segmentation_skeleton_metrics/swc_utils.py
@@ -48,6 +48,9 @@ def __init__(
             Image to world scaling factors applied to xyz coordinates to
             account for anisotropy of the microscope. The default is
             [1.0, 1.0, 1.0].
+        img_coords_bool : bool, optional
+            Indication of whether node xyz coordinates coorespond to voxels or
+            world. The default is True.
         min_size : int, optional
             Threshold on the number of nodes in swc file. Only swc files with
             more than "min_size" nodes are stored in "xyz_coords". The default
@@ -62,6 +65,7 @@ def __init__(
 
         """
         self.anisotropy = anisotropy
+        self.img_coords_bool = img_coords_bool
         self.min_size = min_size
         self.return_graphs = return_graphs