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updated w/ QC compatibility
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@sreyakumar
sreyakumar committed Nov 1, 2024
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117 changes: 18 additions & 99 deletions GAMER_workbook.ipynb
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"### Synchronous calling"
]
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"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
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]
}
],
"source": [
"!pip install metadata-chatbot"
]
},
{
"cell_type": "code",
"execution_count": 1,
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},
{
"cell_type": "code",
"execution_count": 1,
"execution_count": 3,
"metadata": {},
"outputs": [
{
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"name": "stdout",
"output_type": "stream",
"text": [
"Based on the provided context, I could not find any information about the age of the subject at the time of imaging for the specific session SmartSPIM_662616_2023-03-06_17-47-13. The context contains conflicting information about the subject's date of birth and does not explicitly state the age for that particular session. I am unable to provide a definitive answer to the question.\n"
"Based on the provided context, here are the procedures performed on specimen 662616 and their start/end dates:\n",
"\n",
"Subject procedures:\n",
"1. Surgery on 2023-01-25 with virus injections\n",
"2. Surgery on 2023-01-25 with virus injection\n",
"\n",
"Specimen procedures:\n",
"1. Fixation (SHIELD OFF) from 2023-02-10 to 2023-02-12\n",
"2. Fixation (SHIELD ON) from 2023-02-12 to 2023-02-13\n",
"3. Delipidation (24h Delipidation) from 2023-02-15 to 2023-02-16 \n",
"4. Delipidation (Active Delipidation) from 2023-02-16 to 2023-02-18\n",
"5. Refractive index matching (50% EasyIndex) from 2023-02-19 to 2023-02-20\n",
"6. Refractive index matching (100% EasyIndex) from 2023-02-20 to 2023-02-21\n",
"\n",
"Imaging procedure:\n",
"1. SmartSPIM imaging session from 2023-03-06T17:47:13 to 2023-03-06T22:59:16\n"
]
}
],
"source": [
"from metadata_chatbot.agents.GAMER import GAMER\n",
"llm = GAMER()\n",
"query = \"What was the age of the subject at the time of imaging in SmartSPIM_662616_2023-03-06_17-47-13\"\n",
"query = \"Can you list all the procedures performed on the specimen, including their start and end dates? in SmartSPIM_662616_2023-03-06_17-47-13\"\n",
"\n",
"result = await llm.ainvoke(query)\n",
"print(result)"
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10 changes: 6 additions & 4 deletions src/metadata_chatbot/main.py
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from fastapi import FastAPI
import uvicorn
from metadata_chatbot.bedrock_model.chat import get_summary
from metadata_chatbot.agents.GAMER import GAMER

app = FastAPI()

@app.get("/summary/{_id}")
def REST_summary(_id: str):
result = get_summary(_id)
@app.get("/summary/{name}")
async def REST_summary(name: str):
query = f"Give me a detailed 3 sentence summary of the asset name: {name}. Do not include a starting phrase like here is a 3 sentence summary of this asset."
model = GAMER()
result = await model.ainvoke(query)
return result

if __name__ == "__main__":
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