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MPI iclamp fix#332

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Commits on Feb 7, 2023

• Initial draft auditory filternet

  xpliu16

  committed
  cf1d477

Commits on Feb 10, 2023

• Trying different temporal envelope

  xpliu16

  committed
  58b61fa

Commits on Feb 11, 2023

• Work on spectral modulation filters

  xpliu16

  committed
  27e5bdc

Commits on Feb 26, 2023

• Auditory filternet refinement

  xpliu16

  committed
  3e25b69

Commits on Mar 2, 2023

• Padding and other adjustments to auditory filters

  xpliu16

  committed
  298f344

• Merge pull request AllenInstitute#288 from xpliu16/aud_filternet

  Show description for 6b2260e
  xpliu16

  authored
  6b2260e

Commits on Mar 14, 2023

• Handling delay, better documentation of filters, passing of threshold

  xpliu16

  committed
  e98abf7

• Merge pull request AllenInstitute#290 from xpliu16/aud_filternet

  Show description for 3119343
  xpliu16

  authored
  3119343

Commits on Mar 29, 2023

• Miscellaneous updates

  xpliu16

  committed
  12dd888

• Merge pull request AllenInstitute#295 from xpliu16/aud_filternet

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  xpliu16

  authored
  55ff413

Commits on Jun 2, 2023

• Aud filternet b_t now variable

  xpliu16

  committed
  5397e16

• Merge branch 'develop' into aud_filternet

  xpliu16

  committed
  4a67a29

• Merge pull request AllenInstitute#304 from xpliu16/aud_filternet

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  xpliu16

  authored
  42a3361

Commits on Jun 28, 2023

• Fixed psi and direction reading bug

  xpliu16

  committed
  94326fe

• Merge branch 'develop' of https://github.com/xpliu16/bmtk into aud_filternet

  xpliu16

  committed
  83a554a

• Merge pull request AllenInstitute#310 from xpliu16/aud_filternet

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  xpliu16

  authored
  9c1954a

• Fixed bug on "delay"

  xpliu16

  committed
  0e1cea0

• Merge pull request AllenInstitute#311 from xpliu16/aud_filternet

  Show description for f452c2c
  xpliu16

  authored
  f452c2c

Commits on Sep 19, 2023

• update comsol module

  nilsvanrompaey

  committed
  840c205

• update bio_comsol example

  nilsvanrompaey

  committed
  3f0e163

• add comsol .mph file (without saved results)

  nilsvanrompaey

  committed
  a703bcb

• small changes

  nilsvanrompaey

  committed
  21af469

• add dir structure and probe image

  nilsvanrompaey

  committed
  89b7218

Commits on Sep 28, 2023

• fix small inconsistency

  nilsvanrompaey

  committed
  8837f2e

Commits on Sep 29, 2023

• fix small errors

  nilsvanrompaey

  committed
  9fe3e37

Commits on Oct 4, 2023

• mpi iclamp fix

  tjbanks

  committed
  0e3fef4

Commits on Oct 5, 2023

• Adding example with instructions for using NSG with BioNet

  kaeldai

  committed
  37f6891

• Merge pull request AllenInstitute#333 from kaeldai/examples/nsg

  Show description for ae1b2c4
  kaeldai

  authored
  ae1b2c4

Commits on Nov 1, 2023

• Enabling numba speedup on non-separable FilterNet

  shixnya

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  1fe1d04

• Revert "Enabling numba speedup on non-separable FilterNet"

  Show description for 8b0c5e5
  shixnya

  committed
  8b0c5e5

• Making non-separable FilterNet faster (AllenInstitute#335)

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  shixnya

  authored
  bb8dce1

Commits on Nov 8, 2023

• Fixing FilterNet bug (ON/OFF offset, issue AllenInstitute#339) (AllenInstitute#340)

  Show description for 3b07c06
  shixnya

  authored
  3b07c06

Commits on Nov 14, 2023

• Made use of numba optional to prevent conflicts with NEST simulator

  kaeldai

  committed
  121044e

• adding some minor alterations to bionet to run more robustly

  kaeldai

  committed
  b8896dc

• Merge pull request AllenInstitute#341 from kaeldai/fix/numba_tests_nest

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  kaeldai

  authored
  61cb7c8

Commits on Dec 27, 2023

• adding PointNet module to insert NEST synapse weight_recorder

  kaeldai

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  741b639

• Adding PointNet example with plastic synapses (and recordings)

  kaeldai

  committed
  990024e

• Adding weight_recorder module documentation

  kaeldai

  committed
  5669589

• Merge pull request AllenInstitute#345 from kaeldai/feature/nest_weight_recorder

  Show description for 4eaa609
  kaeldai

  authored
  4eaa609

Commits on Feb 21, 2024

• add init files to fix pytest

  kaeldai

  committed
  734c3e2

• Merge pull request AllenInstitute#347 from kaeldai/fix/pytest_issues

  Show description for 39ebecf
  kaeldai

  authored
  39ebecf

• Making physical spacing optional for drifting gratings + faster separable FilterNet (AllenInstitute#346)

  Show description for 4a9c230
  shixnya

  authored
  4a9c230

Commits on Feb 23, 2024

• Including forgotten docstring (AllenInstitute#348)

  Show description for 187681f
  shixnya

  authored
  187681f

Commits on Feb 26, 2024

• Adding example for running all-active cell simulation with full axon

  kaeldai

  committed
  4e398f7

• Merge pull request AllenInstitute#349 from kaeldai/example/bio_all_active_sweep

  Show description for ba481de
  kaeldai

  authored
  ba481de

Commits on Feb 27, 2024

• fixing issue with writing to nwb with mpi and adding some extra documentation

  kaeldai

  committed
  aaa0882

• Merge pull request AllenInstitute#350 from kaeldai/documentation/nwb_update

  Show description for 6e2db7a
  kaeldai

  authored
  6e2db7a

Commits on Mar 13, 2024

• Use inspect module in add_movie for GratingMovie

  Show description for aba21e2
  HDictus

  committed
  aba21e2

• resolving merge conflicts

  kaeldai

  committed
  dd4ff02

• fixing issue with spatial_filter

  kaeldai

  committed
  0187d16

Commits on Mar 18, 2024

• Merge pull request AllenInstitute#352 from HDictus/movie-phase

  Show description for 49a03e9
  kaeldai

  authored
  49a03e9

Commits on Mar 20, 2024

• fixing one last issue

  kaeldai

  committed
  9a7c039

• fixing merge

  kaeldai

  committed
  3c4e97f

• merge was not fully saved

  kaeldai

  committed
  50ef1cf

• fixing import issue

  kaeldai

  committed
  ea4e7c3

• Merge pull request AllenInstitute#351 from AllenInstitute/aud_filternet

  Show description for 11fbb1a
  kaeldai

  authored
  11fbb1a

Commits on Mar 21, 2024

• Fixing issue if model_template column is missing

  kaeldai

  committed
  d54264d

• Merge pull request AllenInstitute#353 from AllenInstitute/aud_filternet

  Show description for ae5d43a
  kaeldai

  authored
  ae5d43a

• Including forgotten docstring (AllenInstitute#354)

  shixnya

  authored
  7e040d0

Commits on Mar 29, 2024

• Auditory filternet tutorial draft

  xpliu16

  committed
  a45d4a5

• Merge pull request AllenInstitute#355 from xpliu16/develop

  Show description for 7804cfd
  xpliu16

  authored
  7804cfd

• Auditory filternet tutorial update

  xpliu16

  committed
  2e86c2a

• Merge branch 'AllenInstitute:develop' into develop

  xpliu16

  authored
  efc2ab0

• Merge pull request AllenInstitute#356 from xpliu16/develop

  Show description for 6949431
  xpliu16

  authored
  6949431

Commits on Apr 1, 2024

• Merge pull request AllenInstitute#330 from nilsvanrompaey/develop

  Show description for 025e3be
  kaeldai

  authored
  025e3be

• minor changes to bio_comsol example

  kaeldai

  committed
  b9a332a

• Merge pull request AllenInstitute#357 from kaeldai/updates/comsol_example

  Show description for 163464b
  kaeldai

  authored
  163464b

• updating version number

  kaeldai

  committed
  9a38165

• Merge pull request AllenInstitute#358 from kaeldai/feature/ver_bump_1.1.0

  Show description for e57c84c
  kaeldai

  authored
  e57c84c

Commits on Apr 16, 2024

• updated aud filternet

  xpliu16

  committed
  9d7d4d9

• Merge branch 'develop' of https://github.com/xpliu16/bmtk into develop

  xpliu16

  committed
  de99e32

• Merge pull request AllenInstitute#359 from xpliu16/develop

  Show description for aa16f2e
  xpliu16

  authored
  aa16f2e

Commits on Apr 20, 2024

• Fix error that random seed is not set when using SpikeGenerator(seed=0)

  chenziao

  committed
  bbd03c2

Commits on Apr 23, 2024

• Merge pull request AllenInstitute#360 from chenziao/develop

  Show description for 44256e3
  kaeldai

  authored
  44256e3

• fixing minor bug with spike-trains unit test

  kaeldai

  committed
  f31ed36

• Merge pull request AllenInstitute#361 from kaeldai/fix/test_psg_variable

  Show description for afd8fbb
  kaeldai

  authored
  afd8fbb

Commits on Apr 24, 2024

• adding tutorial assests

  kaeldai

  committed
  6a9c97e

Commits on Apr 30, 2024

• Making changes to automatically support ModelDB Hay model HOC Template

  kaeldai

  committed
  3565183

• Fixing filter_movie/ example

  kaeldai

  committed
  9bab3c1

• Merge pull request AllenInstitute#364 from kaeldai/fix/lgn_movies_examples

  Show description for 704e4e4
  kaeldai

  authored
  704e4e4

Commits on May 1, 2024

• small change to morphology to fix how sections are parsed

  kaeldai

  committed
  82adf09

Commits on May 2, 2024

• Found Hoc models that would fail calls to hobj.soma[0] since it cell had only one soma section and hobj.soma was not an iteratble list. Added Cell.soma property that can handle this case

  kaeldai

  committed
  f153237

Commits on May 3, 2024

• adding ability for pointnet to use cell_model decorator when loading cells in batch

  kaeldai

  committed
  d66d82e

Commits on May 4, 2024

• making updates to spontaneous syns inputs

  kaeldai

  committed
  22a9bdc

• adding ability in bionet and pointnet to handle custom spikes-train functions inputs

  kaeldai

  committed
  1f29142

Commits on May 5, 2024

• bionet iclamps can now support ranged section selection

  kaeldai

  committed
  ad2b466

• Adding ctdb download utils

  kaeldai

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  a6aac43

Commits on May 7, 2024

• Updating ECP Plotting function

  kaeldai

  committed
  3973dc6

• Adding fix for when running current clamps across multiple cores

  kaeldai

  committed
  2b200cd

• Merge pull request AllenInstitute#366 from kaeldai/fix/multicore_iclamp

  Show description for d1f41a1
  kaeldai

  authored
  d1f41a1

Commits on May 8, 2024

• Merge pull request AllenInstitute#362 from kaeldai/fix/aud_filternet_tut

  Show description for 1e2a37e
  kaeldai

  authored
  1e2a37e

Commits on May 12, 2024

• Fixing compartment reports to include magic statement when running multi-cores

  kaeldai

  committed
  c475407

• Merge pull request AllenInstitute#367 from kaeldai/fix/add_membrane_magic

  Show description for d2c1229
  kaeldai

  authored
  d2c1229

Commits on May 20, 2024

• Enabling to run run.sim() more than once (AllenInstitute#368)

  Show description for 17d92c0
  shixnya

  authored
  17d92c0

• NESTML example network

  xpliu16

  committed
  824a66a

Commits on May 22, 2024

• Merge pull request AllenInstitute#369 from xpliu16/develop

  Show description for b3662cb
  kaeldai

  authored
  b3662cb

• updating way templates can be loaded to fix an ordering bug

  kaeldai

  committed
  20044d7

Commits on Jun 14, 2024

• fixing issues with unit tests

  kaeldai

  committed
  cd29402

• Merge branch 'update/workshop-2024' of https://github.com/AllenInstitute/bmtk into update/workshop-2024

  kaeldai

  committed
  862fd7f

• Merge pull request AllenInstitute#372 from AllenInstitute/update/workshop-2024

  Show description for def7f3e
  kaeldai

  authored
  def7f3e

Commits on Jun 16, 2024

• fixes for Ch5 of workshop tutorial; remove dt attribute in filternet in create_environment, automatic support for npz movies, fix issue with separable kernel when kernel is empty

  kaeldai

  committed
  af62e77

Commits on Jun 25, 2024

• small fix to xstim and larger update of SEClamp module

  kaeldai

  committed
  1b58f44

• Adding fix to make using NESTML a bit more robust + another NESTML example

  kaeldai

  committed
  4eb01f9

Commits on Jun 26, 2024

• Fixing FilterNet behavior for frame_rate != 1000.0

  shixnya

  committed
  6409899

Commits on Jul 6, 2024

• some minor fixes

  kaeldai

  committed
  1e67511

• Merge pull request AllenInstitute#377 from kaeldai/update/workshop-2024

  Show description for f1d7071
  kaeldai

  authored
  f1d7071

• Merge pull request AllenInstitute#378 from AllenInstitute/update/workshop-2024

  Show description for acd94d6
  kaeldai

  authored
  acd94d6

Commits on Jul 8, 2024

• Merge branch 'AllenInstitute:develop' into develop

  shixnya

  authored
  169c5f5

• Update version to 1.1.1

  Show description for 81f99e4
  kaeldai

  authored
  81f99e4

• Merge pull request AllenInstitute#379 from AllenInstitute/version-update-1.1.1

  Show description for 889c55d
  kaeldai

  authored
  889c55d

Commits on Aug 29, 2024

• Update version to 1.1.1

  Show description for c08acac
  

  kaeldai

  authored and

  shixnya

  committed
  c08acac

• Allowing grating contrast to be 0.

  shixnya

  committed
  a5dcedb

• Merge branch 'AllenInstitute:develop' into develop

  shixnya

  authored
  9775f66

• Merge pull request AllenInstitute#375 from shixnya/develop

  Show description for b1ebdf1
  kaeldai

  authored
  b1ebdf1

Commits on Sep 11, 2024

• mpi iclamp fix

  tjbanks

  committed
  60b6af6

• changes

  tjbanks

  committed
  0b9c242

• fix

  tjbanks

  committed
  159c543

• fix

  tjbanks

  committed
  6b174b2