update pres 3

AdamWilsonLabEDU · Sep 16, 2020 · 78391e5 · 78391e5
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diff --git a/Schedule.Rmd b/Schedule.Rmd
@@ -7,7 +7,7 @@ output:
 ---
 
 ```{r, echo=FALSE, message=FALSE, results='hide', purl=FALSE}
-library(tidyverse)
+library(tidyverse) 
 source("functions.R")
 
 yamls=append(

diff --git a/docs/pres/PS_03_Git.Rmd b/docs/pres/PS_03_Git.Rmd
@@ -41,6 +41,14 @@ week: 2
 </iframe>
 <iframe src="https://docs.google.com/spreadsheets/d/e/2PACX-1vSm_SdDqTPR5j7dXg_VeaUaKSxCVevvytsWQYKcT_kBCgOkKMsouHfafZ6wtbVjXaUSYxODReZgxAC3/pubhtml?gid=868447735&amp;single=true&amp;widget=true&amp;headers=false" style="height: 200px; width: 100%;"></iframe>
 
+# Next Week's Case Study
+
+<iframe
+  src="http://wilsonlab.io/GEO511/CS_03.html"
+  width="100%" height="800">
+</iframe>
+[source](http://wilsonlab.io/GEO511/CS_03.html)
+
 
 # Version Control
 
@@ -185,17 +193,7 @@ Click the green arrow to sync with GitHub.
 
 Git has many, many more features...
 
-#  Let's do it!
-
-## Task 2 {data-background-iframe="../TK_03.html"}
-
-[Task 2](../TK_03.html)
-
-# More advanced Git
-
-## Git command line from RStudio
-
-RStudio has limited functionality.  
+RStudio GUI has limited functionality.  
 
 <img src="Week_03_Git_assets/CommandLine.png" alt="alt text" width="75%">
 

diff --git a/docs/pres/PS_03_Git.html b/docs/pres/PS_03_Git.html
@@ -493,6 +493,7 @@ <h2>Let’s pick a winner!</h2>
 <iframe src="https://docs.google.com/spreadsheets/d/e/2PACX-1vSm_SdDqTPR5j7dXg_VeaUaKSxCVevvytsWQYKcT_kBCgOkKMsouHfafZ6wtbVjXaUSYxODReZgxAC3/pubhtml?gid=868447735&amp;single=true&amp;widget=true&amp;headers=false" style="height: 200px; width: 100%;">
 </iframe>
 </section></section>
+<section id="next-weeks-case-study" class="title-slide slide level1"><h1>Next Week’s Case Study</h1></section>
 <section><section id="version-control" class="title-slide slide level1"><h1>Version Control</h1></section><section id="version-control-with-file-names" class="slide level2">
 <h2>Version control with file names</h2>
 <ul>
@@ -623,20 +624,10 @@ <h2>Do’s and don’ts</h2>
 <li><strong>DO NOT</strong> move files around after starting the course repository</li>
 <li><strong>DO NOT</strong> edit/move the <code>.git</code> or <code>tests</code> folder</li>
 </ul>
-</section><section id="git-file-lifecycle" class="slide level2">
-<h2>Git File Lifecycle</h2>
-<p><img src="Week_03_Git_assets/lifecycle.png" alt="alt text" width="100%"></p>
 </section><section id="and-much-more" class="slide level2">
 <h2>And much more!</h2>
 <p>Git has many, many more features…</p>
-</section></section>
-<section><section id="lets-do-it" class="title-slide slide level1"><h1>Let’s do it!</h1></section><section id="task-2" class="slide level2" data-background-iframe="../TK_03.html">
-<h2>Task 2</h2>
-<p><a href="../TK_03.html">Task 2</a></p>
-</section></section>
-<section><section id="more-advanced-git" class="title-slide slide level1"><h1>More advanced Git</h1></section><section id="git-command-line-from-rstudio" class="slide level2">
-<h2>Git command line from RStudio</h2>
-<p>RStudio has limited functionality.</p>
+<p>RStudio GUI has limited functionality.</p>
 <p><img src="Week_03_Git_assets/CommandLine.png" alt="alt text" width="75%"></p>
 </section><section id="git-help" class="slide level2">
 <h2>Git help</h2>

diff --git a/docs/pres/PS_03_Git.md b/docs/pres/PS_03_Git.md
@@ -41,6 +41,14 @@ week: 2
 </iframe>
 <iframe src="https://docs.google.com/spreadsheets/d/e/2PACX-1vSm_SdDqTPR5j7dXg_VeaUaKSxCVevvytsWQYKcT_kBCgOkKMsouHfafZ6wtbVjXaUSYxODReZgxAC3/pubhtml?gid=868447735&amp;single=true&amp;widget=true&amp;headers=false" style="height: 200px; width: 100%;"></iframe>
 
+# Next Week's Case Study
+
+<iframe
+  src="http://wilsonlab.io/GEO511/CS_03.html"
+  width="100%" height="800">
+</iframe>
+[source](http://wilsonlab.io/GEO511/CS_03.html)
+
 
 # Version Control
 
@@ -181,25 +189,11 @@ Click the green arrow to sync with GitHub.
 * **DO NOT** move files around after starting the course repository
 * **DO NOT** edit/move the `.git` or `tests` folder
 
-## Git File Lifecycle
-
-<img src="Week_03_Git_assets/Lifecycle.png" alt="alt text" width="100%">
-
 ## And much more!
 
 Git has many, many more features...
 
-#  Let's do it!
-
-## Task 2 {data-background-iframe="../TK_03.html"}
-
-[Task 2](../TK_03.html)
-
-# More advanced Git
-
-## Git command line from RStudio
-
-RStudio has limited functionality.  
+RStudio GUI has limited functionality.  
 
 <img src="Week_03_Git_assets/CommandLine.png" alt="alt text" width="75%">
 

diff --git a/docs/pres/_site.yml b/docs/pres/_site.yml
@@ -1,5 +1,5 @@
 css: https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css
-output: 
+output:  
   revealjs::revealjs_presentation:
       lib_dir: externals
       keep_md: true

diff --git a/pres/PS_03_Git.Rmd b/pres/PS_03_Git.Rmd
@@ -41,6 +41,14 @@ week: 2
 </iframe>
 <iframe src="https://docs.google.com/spreadsheets/d/e/2PACX-1vSm_SdDqTPR5j7dXg_VeaUaKSxCVevvytsWQYKcT_kBCgOkKMsouHfafZ6wtbVjXaUSYxODReZgxAC3/pubhtml?gid=868447735&amp;single=true&amp;widget=true&amp;headers=false" style="height: 200px; width: 100%;"></iframe>
 
+# Next Week's Case Study
+
+<iframe
+  src="http://wilsonlab.io/GEO511/CS_03.html"
+  width="100%" height="800">
+</iframe>
+[source](http://wilsonlab.io/GEO511/CS_03.html)
+
 
 # Version Control
 
@@ -185,17 +193,7 @@ Click the green arrow to sync with GitHub.
 
 Git has many, many more features...
 
-#  Let's do it!
-
-## Task 2 {data-background-iframe="../TK_03.html"}
-
-[Task 2](../TK_03.html)
-
-# More advanced Git
-
-## Git command line from RStudio
-
-RStudio has limited functionality.  
+RStudio GUI has limited functionality.  
 
 <img src="Week_03_Git_assets/CommandLine.png" alt="alt text" width="75%">
 

diff --git a/pres/PS_03_Git.html b/pres/PS_03_Git.html
@@ -493,6 +493,7 @@ <h2>Let’s pick a winner!</h2>
 <iframe src="https://docs.google.com/spreadsheets/d/e/2PACX-1vSm_SdDqTPR5j7dXg_VeaUaKSxCVevvytsWQYKcT_kBCgOkKMsouHfafZ6wtbVjXaUSYxODReZgxAC3/pubhtml?gid=868447735&amp;single=true&amp;widget=true&amp;headers=false" style="height: 200px; width: 100%;">
 </iframe>
 </section></section>
+<section id="next-weeks-case-study" class="title-slide slide level1"><h1>Next Week’s Case Study</h1></section>
 <section><section id="version-control" class="title-slide slide level1"><h1>Version Control</h1></section><section id="version-control-with-file-names" class="slide level2">
 <h2>Version control with file names</h2>
 <ul>
@@ -623,20 +624,10 @@ <h2>Do’s and don’ts</h2>
 <li><strong>DO NOT</strong> move files around after starting the course repository</li>
 <li><strong>DO NOT</strong> edit/move the <code>.git</code> or <code>tests</code> folder</li>
 </ul>
-</section><section id="git-file-lifecycle" class="slide level2">
-<h2>Git File Lifecycle</h2>
-<p><img src="Week_03_Git_assets/lifecycle.png" alt="alt text" width="100%"></p>
 </section><section id="and-much-more" class="slide level2">
 <h2>And much more!</h2>
 <p>Git has many, many more features…</p>
-</section></section>
-<section><section id="lets-do-it" class="title-slide slide level1"><h1>Let’s do it!</h1></section><section id="task-2" class="slide level2" data-background-iframe="../TK_03.html">
-<h2>Task 2</h2>
-<p><a href="../TK_03.html">Task 2</a></p>
-</section></section>
-<section><section id="more-advanced-git" class="title-slide slide level1"><h1>More advanced Git</h1></section><section id="git-command-line-from-rstudio" class="slide level2">
-<h2>Git command line from RStudio</h2>
-<p>RStudio has limited functionality.</p>
+<p>RStudio GUI has limited functionality.</p>
 <p><img src="Week_03_Git_assets/CommandLine.png" alt="alt text" width="75%"></p>
 </section><section id="git-help" class="slide level2">
 <h2>Git help</h2>

diff --git a/pres/PS_03_Git.md b/pres/PS_03_Git.md
@@ -41,6 +41,14 @@ week: 2
 </iframe>
 <iframe src="https://docs.google.com/spreadsheets/d/e/2PACX-1vSm_SdDqTPR5j7dXg_VeaUaKSxCVevvytsWQYKcT_kBCgOkKMsouHfafZ6wtbVjXaUSYxODReZgxAC3/pubhtml?gid=868447735&amp;single=true&amp;widget=true&amp;headers=false" style="height: 200px; width: 100%;"></iframe>
 
+# Next Week's Case Study
+
+<iframe
+  src="http://wilsonlab.io/GEO511/CS_03.html"
+  width="100%" height="800">
+</iframe>
+[source](http://wilsonlab.io/GEO511/CS_03.html)
+
 
 # Version Control
 
@@ -181,25 +189,11 @@ Click the green arrow to sync with GitHub.
 * **DO NOT** move files around after starting the course repository
 * **DO NOT** edit/move the `.git` or `tests` folder
 
-## Git File Lifecycle
-
-<img src="Week_03_Git_assets/Lifecycle.png" alt="alt text" width="100%">
-
 ## And much more!
 
 Git has many, many more features...
 
-#  Let's do it!
-
-## Task 2 {data-background-iframe="../TK_03.html"}
-
-[Task 2](../TK_03.html)
-
-# More advanced Git
-
-## Git command line from RStudio
-
-RStudio has limited functionality.  
+RStudio GUI has limited functionality.  
 
 <img src="Week_03_Git_assets/CommandLine.png" alt="alt text" width="75%">
 

diff --git a/pres/_site.yml b/pres/_site.yml
@@ -1,5 +1,5 @@
 css: https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css
-output: 
+output:  
   revealjs::revealjs_presentation:
       lib_dir: externals
       keep_md: true